BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148395.10 - phase: 0
(247 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19871 39 8e-04
AV769326 32 0.13
AU251526 31 0.17
BI418438 30 0.39
TC14261 weakly similar to UP|Q05929 (Q05929) EDGP precursor (Fra... 30 0.39
TC13714 homologue to UP|Q7XA53 (Q7XA53) Sucrose transporter, par... 29 0.86
AV779145 28 1.1
TC8030 28 1.5
AV421787 28 1.5
TC10471 weakly similar to UP|Q84QE1 (Q84QE1) Avr9/Cf-9 rapidly e... 28 1.5
TC9623 homologue to UP|Q8H1K8 (Q8H1K8) Stromal ascorbate peroxid... 28 1.9
TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber... 27 2.5
TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%) 27 3.3
TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.3... 27 3.3
AV773972 27 3.3
TC19126 similar to UP|Q8W435 (Q8W435) CYP1 (Peptidyl-prolyl cis... 27 3.3
TC13931 weakly similar to UP|BAC25162 (BAC25162) Adult male test... 27 4.3
AV419801 26 5.6
AV410336 26 5.6
TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%) 26 5.6
>TC19871
Length = 528
Score = 38.9 bits (89), Expect = 8e-04
Identities = 15/24 (62%), Positives = 20/24 (82%)
Frame = +3
Query: 204 DGELSYMRAHFERVIGSKDSETYY 227
+GE+ YMRA +ERV+G KDSE +Y
Sbjct: 36 EGEIMYMRARYERVVGFKDSEAFY 107
>AV769326
Length = 262
Score = 31.6 bits (70), Expect = 0.13
Identities = 19/47 (40%), Positives = 25/47 (52%), Gaps = 5/47 (10%)
Frame = +2
Query: 3 PPHAAQ-----TMTLPTAQRPPPAITSPKVPMQISLQPANSKSKRSS 44
PP AA ++T P+ Q+PP + TS + P S A S S RSS
Sbjct: 119 PPSAASDPNSPSLTAPSLQKPPSSPTSTEPPSSSSTPSAPSASTRSS 259
>AU251526
Length = 371
Score = 31.2 bits (69), Expect = 0.17
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -3
Query: 3 PPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANS 38
PP +A+T+ P++ PPP ++P P+ IS P +S
Sbjct: 357 PPRSAETLAPPSSPLPPP--STPPEPISISALPPSS 256
>BI418438
Length = 431
Score = 30.0 bits (66), Expect = 0.39
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 2 APPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANSKSKRSSTN 46
+PP T T T PPP+ T P P Q S +PA + S+ N
Sbjct: 199 SPPPPTATTTTTTIPPPPPSPTPP--PRQKSSKPARPPASPSNAN 327
Score = 28.5 bits (62), Expect = 1.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 2 APPHAAQTMTLPTAQRPPPAITSPKVP 28
+PPH + LP Q+PPP P P
Sbjct: 179 SPPHPHPLLRLPQPQQPPPPFPHPLPP 259
>TC14261 weakly similar to UP|Q05929 (Q05929) EDGP precursor (Fragment),
partial (84%)
Length = 1604
Score = 30.0 bits (66), Expect = 0.39
Identities = 21/54 (38%), Positives = 26/54 (47%), Gaps = 10/54 (18%)
Frame = +2
Query: 3 PPHAAQTMTLPTAQR------PPPAITSPKVPMQIS----LQPANSKSKRSSTN 46
PP A T TL + R PPPA +SPK Q S PA S R+S++
Sbjct: 359 PPSPAATTTLVASSRTTPSPEPPPAASSPKTLSQSSPPTASHPAESPLSRTSSS 520
>TC13714 homologue to UP|Q7XA53 (Q7XA53) Sucrose transporter, partial (32%)
Length = 512
Score = 28.9 bits (63), Expect = 0.86
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 3 PPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPAN----SKSKRSSTNKFFGKFRSMFRS 58
P H A + +++PPPA+++ ++ S ++ S R ST + F R S
Sbjct: 36 PEHTASSTMSSRSRKPPPAMSTARISKAASSSQSHFSQLSPPPRWST*RKFHSRRRRRLS 215
Query: 59 FPIIVPSCK 67
P I +C+
Sbjct: 216 IPTITVACR 242
>AV779145
Length = 417
Score = 28.5 bits (62), Expect = 1.1
Identities = 18/37 (48%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Frame = +2
Query: 3 PPHAAQTMTLP-TAQRPPPAITSPKVPMQISLQPANS 38
PPHA T P TA PA TSP + +S PANS
Sbjct: 143 PPHA----TAPGTASLAAPAATSPPLTSPLSPSPANS 241
>TC8030
Length = 991
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/53 (24%), Positives = 24/53 (44%)
Frame = +1
Query: 13 PTAQRPPPAITSPKVPMQISLQPANSKSKRSSTNKFFGKFRSMFRSFPIIVPS 65
P A+ PPP +S S+ P+ ++ ++ FRS++ + PS
Sbjct: 118 PRAKPPPPRASSSHAHAATSMYPSQERATTMGNHRRLSPFRSLWPAASTTAPS 276
>AV421787
Length = 250
Score = 28.1 bits (61), Expect = 1.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 3 PPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANS 38
PPH+ T T PPP+ S P + PA +
Sbjct: 113 PPHSPPTSAYGTPSPPPPSAASSSTPSAAAPAPATT 220
>TC10471 weakly similar to UP|Q84QE1 (Q84QE1) Avr9/Cf-9 rapidly elicited
protein 189, partial (18%)
Length = 459
Score = 28.1 bits (61), Expect = 1.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 3 PPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANSKSK--RSST 45
PPH +T T T PP SP P ++ QP + + RSST
Sbjct: 83 PPHRRRTTTAVTFS-PPSTPISPTTPSSVTTQPKSPTNAWLRSST 214
>TC9623 homologue to UP|Q8H1K8 (Q8H1K8) Stromal ascorbate peroxidase,
partial (42%)
Length = 640
Score = 27.7 bits (60), Expect = 1.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 1 MAPPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANSKSKRSSTNKFF---GKFRSMFR 57
+ PP + +LP P P+ SP P + + P+N+ + + FF G+ R +FR
Sbjct: 91 LPPPPEPPSHSLPPHTPPVPSSHSPPPPPPLPVPPSNACAPLLAFLTFFSIRGELRFVFR 270
>TC15802 similar to UP|Q9XIV1 (Q9XIV1) mRNA expressed in cucumber hypocotyls
(Arabinogalactan protein), partial (26%)
Length = 795
Score = 27.3 bits (59), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 10/53 (18%)
Frame = +2
Query: 2 APPHAAQTMTLPTAQRPP-PA---------ITSPKVPMQISLQPANSKSKRSS 44
+PP AA ++ P A+ PP PA +T+P+VP PA SK+K+ +
Sbjct: 314 SPPPAAVPVSSPPAKSPPAPAPTAVPVAAPVTTPEVP-----APAPSKTKKDA 457
>TC14982 similar to UP|Q9FPI2 (Q9FPI2) At1g17620, partial (32%)
Length = 1036
Score = 26.9 bits (58), Expect = 3.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 2 APPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANS 38
+PP + T T P Q PP TSP P + + ++S
Sbjct: 303 SPPSNSPTSTSPPPQPSPPNSTSPSPPQTPTRKTSHS 413
>TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.33), partial
(12%)
Length = 565
Score = 26.9 bits (58), Expect = 3.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 3 PPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPA----NSKSKRSST 45
PP Q + P PPP+ T+P ++ PA +S SK S+T
Sbjct: 401 PPPQQQPFSPPPPPPPPPSPTAPSSHPRLPAAPAAGRISSASKSSTT 541
>AV773972
Length = 491
Score = 26.9 bits (58), Expect = 3.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 9 TMTLPTAQRPPPAITSPKVPMQISLQPANSKSKRS 43
T+T+P + PPPA T+P + QP + S+ S
Sbjct: 6 TLTIPHQRAPPPATTTP-----AAAQPPDQSSRPS 95
>TC19126 similar to UP|Q8W435 (Q8W435) CYP1 (Peptidyl-prolyl cis-trans
isomerase) (PPIase) (Rotamase) , partial (39%)
Length = 277
Score = 26.9 bits (58), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 2 APPHAAQTMTLPTAQRPPPAITSPKVP 28
APP A+ PT R PP I++P P
Sbjct: 110 APPVASSWSFSPT*PRAPPXISAPSAP 190
>TC13931 weakly similar to UP|BAC25162 (BAC25162) Adult male testis cDNA,
RIKEN full-length enriched library, clone:1700094L18
product:protamine 1, full insert sequence, partial (47%)
Length = 392
Score = 26.6 bits (57), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 13 PTAQRPPPAITSPKVPMQISL 33
P+ PPP++ SP P ISL
Sbjct: 289 PSTTTPPPSLHSPSTPFPISL 351
>AV419801
Length = 234
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 5 HAAQTMTLPTAQRPPPAITSP--KVPMQISLQP 35
H T+P QR PP T+P ++P+ I QP
Sbjct: 63 HRLPGATVPPPQRRPPTTTTPLRRLPIPILQQP 161
>AV410336
Length = 358
Score = 26.2 bits (56), Expect = 5.6
Identities = 15/43 (34%), Positives = 18/43 (40%)
Frame = +1
Query: 4 PHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANSKSKRSSTN 46
P + + T P PPP +PK P S P S S S N
Sbjct: 34 PTTSTSSTAPPPHAPPPPTPNPKSPSSSSPTP-TSPSPHSGRN 159
>TC14875 similar to UP|Q9VNX6 (Q9VNX6) CG7421-PA, partial (4%)
Length = 1240
Score = 26.2 bits (56), Expect = 5.6
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 3 PPHAAQTMTLPTAQRPPPAITSPKVPMQISLQPANSKSKRSST 45
PP +T T PPA TSP P P S S +ST
Sbjct: 136 PPSNPKTSTSTPTPASPPASTSPLTP------PTTSPSSSTST 246
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,385,934
Number of Sequences: 28460
Number of extensions: 60499
Number of successful extensions: 528
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of query: 247
length of database: 4,897,600
effective HSP length: 88
effective length of query: 159
effective length of database: 2,393,120
effective search space: 380506080
effective search space used: 380506080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148395.10