TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148360.12 + phase: 0 /pseudo
         (102 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB828968                                                               25  1.6
AV769753                                                               25  2.1
BP064635                                                               25  2.1
TC12907 UP|Q40201 (Q40201) RAB1A, complete                             25  2.1
AV767030                                                               24  3.6
TC9354 similar to UP|Q9FN03 (Q9FN03) UVB-resistance protein UVR8...    23  6.1
BP042574                                                               23  6.1
TC14783 UP|O04360 (O04360) Late nodulin Nlj16, complete                23  8.0
TC11484 similar to PIR|JC5965|JC5965 cytochrome P450 CYP86A1 - A...    23  8.0
AV775050                                                               23  8.0

>CB828968 
          Length = 572

 Score = 25.4 bits (54), Expect = 1.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 3   TKVDPPFDVIWVYSAIKFGC 22
           +K  PPF + WV+    F C
Sbjct: 354 SK*SPPFSIFWVFQDFSFQC 295


>AV769753 
          Length = 496

 Score = 25.0 bits (53), Expect = 2.1
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = +1

Query: 44  ISACSASVGGSKSIALLAPKAMKEVKSLVDMILGFMS 80
           +S CS S   SKS +  + + +K+  S+V    G +S
Sbjct: 343 LSCCSNSAENSKSSSSASARCLKDFTSIVSFASGGLS 453


>BP064635 
          Length = 504

 Score = 25.0 bits (53), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 64  AMKEVKSLVDMI---LGFMSICCSKI 86
           A   V  LVD++   LGF+++CCS +
Sbjct: 373 AYGRVLGLVDLVVSMLGFLALCCSTV 296


>TC12907 UP|Q40201 (Q40201) RAB1A, complete
          Length = 869

 Score = 25.0 bits (53), Expect = 2.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 10  DVIWVYSAIKFGCRKSLKGDILEQI 34
           DV W++   K  C KSL   +L  I
Sbjct: 791 DVTWMFETAKISCSKSLYNIVLNLI 865


>AV767030 
          Length = 460

 Score = 24.3 bits (51), Expect = 3.6
 Identities = 18/52 (34%), Positives = 25/52 (47%)
 Frame = +3

Query: 48  SASVGGSKSIALLAPKAMKEVKSLVDMILGFMSICCSKISEEKDLDLVLSFS 99
           SA + GSK         M  V  L D++LG + I  S  S ++   LVL+ S
Sbjct: 270 SA*LAGSKQRVKSTSLVMDLVTDLADLVLGALEIAASVFSVKR---LVLTSS 416


>TC9354 similar to UP|Q9FN03 (Q9FN03) UVB-resistance protein UVR8
           (AT5g63860/MGI19_6), partial (8%)
          Length = 585

 Score = 23.5 bits (49), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 11  VIWVYSAIKFGCRKSLKGDILEQIS 35
           V W+Y   KFG R SL+   + +I+
Sbjct: 461 VCWLYDL*KFGLRYSLQATYVVEIN 535


>BP042574 
          Length = 505

 Score = 23.5 bits (49), Expect = 6.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 48  SASVGGSKSIALLAPKAMKEVKSLVDMILGFMSICCSKISEEKD 91
           S+S     S ALL+     E +S +   +   SI  S ISE KD
Sbjct: 379 SSSRASWASAALLSTSNNSETRSSISCSVRGSSITLSSISEGKD 248


>TC14783 UP|O04360 (O04360) Late nodulin Nlj16, complete
          Length = 540

 Score = 23.1 bits (48), Expect = 8.0
 Identities = 10/21 (47%), Positives = 15/21 (70%)
 Frame = +3

Query: 77  GFMSICCSKISEEKDLDLVLS 97
           G  S+C  K +EE+D+ L+LS
Sbjct: 432 GAFSLCXEKETEEEDVFLLLS 494


>TC11484 similar to PIR|JC5965|JC5965 cytochrome P450 CYP86A1 - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (43%)
          Length = 752

 Score = 23.1 bits (48), Expect = 8.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 81  ICCSKISEEKDLDLVLSFSSL 101
           ICC  +SEE+ L+  L  S L
Sbjct: 604 ICCQMLSEEEGLEDPLELSPL 542


>AV775050 
          Length = 382

 Score = 23.1 bits (48), Expect = 8.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 9  FDVIWVYSAIKFGCRKS 25
          F ++W +++++FGC  S
Sbjct: 96 FIILWFHNSVEFGCSVS 46


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,656,513
Number of Sequences: 28460
Number of extensions: 16291
Number of successful extensions: 79
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of query: 102
length of database: 4,897,600
effective HSP length: 78
effective length of query: 24
effective length of database: 2,677,720
effective search space: 64265280
effective search space used: 64265280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)