BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148359.7 + phase: 0
(789 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI417841 74 9e-14
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 64 1e-10
TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial ... 61 8e-10
AV427422 55 3e-08
BF177840 49 4e-06
AI967436 28 4.3
TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial ... 28 5.6
TC18795 28 7.3
TC16905 similar to UP|Q8GUE9 (Q8GUE9) Tyrosine aminotransferase ... 27 9.6
>BI417841
Length = 617
Score = 73.9 bits (180), Expect = 9e-14
Identities = 42/136 (30%), Positives = 67/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 204 NSKWGLVFDGAV--NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 261
N L FDG+ N G GAV+ + G + + + TNN AEY I G++ A
Sbjct: 127 NRSCTLEFDGSSKGNPGSAGAGAVLRAEDGSKV-YLREGVGNQTNNQAEYRGLILGLKHA 303
Query: 262 IDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQ 321
+ +H+++ GDS LV Q++G W+ + N+ + A+ L + F +++H+PR N
Sbjct: 304 HEQGYQHINVKGDSQLVCKQVEGSWKARNPNIASLCNEAKELKSKFQSFDINHVPRQYNS 483
Query: 322 MADALATLSSMFRVNH 337
AD A L H
Sbjct: 484 EADVQANLGVNLPAGH 531
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 63.5 bits (153), Expect = 1e-10
Identities = 36/96 (37%), Positives = 49/96 (50%), Gaps = 1/96 (1%)
Frame = +2
Query: 571 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-KRIVQKMVTTYKNWHE 629
+NG + Q C+ I+ SS PQ NG EAANK I K I +++ W +
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 630 MLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 665
LP L Y T +SS TPF L YG + +LP+E+
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 295
>TC16320 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (11%)
Length = 632
Score = 60.8 bits (146), Expect = 8e-10
Identities = 30/91 (32%), Positives = 45/91 (48%)
Frame = +2
Query: 251 YEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKV 310
Y I G++ AI KH+ + GDS LV NQ++G W+ + N+ A+ L F
Sbjct: 2 YRGLILGLKHAIKEGYKHIQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSF 181
Query: 311 ELHHIPRDENQMADALATLSSMFRVNHWNDV 341
+++HIPR+ N AD A R +V
Sbjct: 182 KINHIPREYNSEADVQANFGISLRAGQVEEV 274
>AV427422
Length = 417
Score = 55.5 bits (132), Expect = 3e-08
Identities = 33/133 (24%), Positives = 64/133 (47%), Gaps = 2/133 (1%)
Frame = +1
Query: 520 SNGHRFILVAIDYFTKWVEAASYTN-VTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNN 578
S G+ +LV +D +K+ + T +V+A ++ +GVP I++D +
Sbjct: 19 SKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLFMS 198
Query: 579 NVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KNWHEMLPYALHG 637
N + L + + S+ Y P+ +G E N+ ++ ++ + K+W +P+A +
Sbjct: 199 NFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAEYW 378
Query: 638 YRTTVRSSTGATP 650
Y T+ STG TP
Sbjct: 379 YNTSYHVSTGQTP 417
>BF177840
Length = 410
Score = 48.5 bits (114), Expect = 4e-06
Identities = 26/101 (25%), Positives = 49/101 (47%), Gaps = 1/101 (0%)
Frame = +2
Query: 566 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVT-TY 624
+ I++D T ++ + L + + S+ PQ +G E NK + +++ ++
Sbjct: 11 TSIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNL 190
Query: 625 KNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 665
K W LP+ Y V S+T +PF +VYG + PL++
Sbjct: 191 KMWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>AI967436
Length = 294
Score = 28.5 bits (62), Expect = 4.3
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 13/70 (18%)
Frame = +2
Query: 384 LSREYPPGASKQDKKTLRRLAGRFLLDGD------------ILYKRNYDMVLLRCVDEHE 431
L++ Y P K+ K +R L+G L ++YKR + C+DE +
Sbjct: 80 LTKWYSPYTHKERNKIIRELSGMVLSRAPKLCNFVEWRGQKVVYKRYASLYFCMCIDEED 259
Query: 432 AE-QLMHDVH 440
E Q++ +H
Sbjct: 260 NERQVLEMIH 289
>TC19866 similar to UP|Q8L7J2 (Q8L7J2) Beta-glucosidase, partial (25%)
Length = 562
Score = 28.1 bits (61), Expect = 5.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 554 IKNNIICRYGVPSKIITDNGTNLNNN----VVQALCEEFKIEHHN 594
+ N I +YG P +IT+NG + NN + AL +E +I ++N
Sbjct: 76 LMNYIKQKYGNPLVVITENGMDDPNNPFISIKDALKDEKRIRYYN 210
>TC18795
Length = 755
Score = 27.7 bits (60), Expect = 7.3
Identities = 16/31 (51%), Positives = 20/31 (63%)
Frame = +1
Query: 29 YLLEPPILVPPVEGRPLILYLSVFDESVGCV 59
+LLEPP LVPP+ L L S+ D +GCV
Sbjct: 550 WLLEPP-LVPPL----LFLPASILDNILGCV 627
>TC16905 similar to UP|Q8GUE9 (Q8GUE9) Tyrosine aminotransferase , partial
(37%)
Length = 610
Score = 27.3 bits (59), Expect = 9.6
Identities = 13/54 (24%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Frame = -1
Query: 551 AKFIKNNIICRYGVPSKIITDNG-----TNLNNNVVQALCEEFKIEHHNSSPYR 599
AK I++ + VP ++ITD+ ++++ + E + HH+ P+R
Sbjct: 412 AKVIRSQSLSPTAVPGRMITDSSFASLKEKSMSSLISSSSEXIQFHHHSHGPFR 251
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,243,020
Number of Sequences: 28460
Number of extensions: 204944
Number of successful extensions: 922
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of query: 789
length of database: 4,897,600
effective HSP length: 98
effective length of query: 691
effective length of database: 2,108,520
effective search space: 1456987320
effective search space used: 1456987320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Medicago: description of AC148359.7