TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148359.6 + phase: 0 /pseudo
         (2066 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein...    30  2.9
TC13087 similar to UP|Q9FIF8 (Q9FIF8) Serine protease-like prote...    30  5.0
BP085186                                                               29  6.6
AV777838                                                               29  6.6
BI418811                                                               29  8.6
TC9511 similar to PIR|S36955|S36955 cytochrome-c oxidase  chain ...    29  8.6
BP048900                                                               29  8.6

>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
           partial (88%)
          Length = 1134

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +1

Query: 865 GFPRESSTVLGLLMLSL-----KKPLDLVSGLYLL 894
           GFPR S + LGL+M SL      KPL++ S L L+
Sbjct: 631 GFPRRSCSSLGLMMFSLPPGVPPKPLEISSRLLLI 735


>TC13087 similar to UP|Q9FIF8 (Q9FIF8) Serine protease-like protein, partial
           (31%)
          Length = 1036

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 228 RHTHICRILSIRSSHRFIISTLCRRASLK--CPSMRLPNR* 266
           +H+H C++L  R+ HR   S++C+ + ++   P  RL  R*
Sbjct: 73  KHSHWCKLLRTRTRHRKRCSSICKDSCIQSMLPKPRLRRR* 195


>BP085186 
          Length = 388

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 1976 LFLFHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFFFYFISSFFNF 2024
            L +F F+F  +  F+ ILFFL F           C  FFF+F   FF F
Sbjct: 128  LGVFSFSFLGVDIFLFILFFLWF-----------CFFFFFFFFFFFFFF 241


>AV777838 
          Length = 565

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 14/39 (35%), Positives = 16/39 (40%)
 Frame = +3

Query: 1979 FHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFFFYF 2017
            F F F    FF    FF         P  H C +FFF+F
Sbjct: 216  FFFFFFFFFFFFFFFFFFFHESHRRWPHHHHCASFFFFF 332


>BI418811 
          Length = 462

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 15/32 (46%), Positives = 18/32 (55%)
 Frame = -1

Query: 2011 PNFFFYFISSFFNFAV*SSSSYFCRKVQSSFF 2042
            P+FFF+F S F   A  SSS +F     SS F
Sbjct: 441  PSFFFFFSSFFATPAATSSSFFFTSTALSSLF 346


>TC9511 similar to PIR|S36955|S36955 cytochrome-c oxidase  chain III -
            Herpetomonas                muscarum muscarum
            mitochondrion {Herpetomonas muscarum muscarum;}  ,
            partial (6%)
          Length = 663

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = +2

Query: 1978 LFHFTFGQILFFIQILFFLHFGPSIEVPKLHFCPNFF---------FYFISSFFNFAV 2026
            L+ F+FG++L F   LFF          +++ C  FF         F+F+S FF F +
Sbjct: 407  LYFFSFGEVLLFFFFLFFYC*KERKGEREMNDCCIFFFG*FNYPDSFFFLSFFFFFGL 580


>BP048900 
          Length = 433

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 1999 GPSIEVPKLHFCPNFFFYFISSFFNFAV*SSSSYFCR 2035
            GP IE  K HFC   FFY +     F V    +YF R
Sbjct: 306  GPIIEPTKAHFCQCKFFYKLEGIT*FLV-CKGNYFIR 199


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.364    0.161    0.615 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,071,908
Number of Sequences: 28460
Number of extensions: 592800
Number of successful extensions: 9894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5446
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 4015
Number of HSP's gapped (non-prelim): 6570
length of query: 2066
length of database: 4,897,600
effective HSP length: 104
effective length of query: 1962
effective length of database: 1,937,760
effective search space: 3801885120
effective search space used: 3801885120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 63 (28.9 bits)