BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148348.6 + phase: 0
(552 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP053476 133 7e-32
BP030332 108 2e-24
BP066774 84 6e-17
AV773273 59 5e-13
AV413186 69 2e-12
BP043633 59 3e-09
BP038410 58 5e-09
TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precu... 55 3e-08
AU089102 55 4e-08
TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding p... 54 5e-08
TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 prote... 51 6e-08
TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protei... 52 2e-07
BI420337 51 6e-07
TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%) 50 7e-07
AV427333 50 7e-07
TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein... 50 9e-07
BP044109 50 9e-07
AU251550 50 1e-06
BI418940 49 2e-06
TC10928 weakly similar to PIR|G96668|G96668 protein F1N19.7 [imp... 49 2e-06
>BP053476
Length = 514
Score = 133 bits (335), Expect = 7e-32
Identities = 65/140 (46%), Positives = 95/140 (67%), Gaps = 8/140 (5%)
Frame = -3
Query: 421 KKYTAISMLDGKNRIIEY--------KNPTLYKDDEKLIAMNSMKDAGYVPDTRYVLHDI 472
KK S+++ NR+ E+ ++ +Y EK+ + +K GYVP T VL DI
Sbjct: 464 KKTPGYSLVELANRVYEFTLGDRSHPQSQDVYALLEKITEL--LKLEGYVPRTENVLADI 291
Query: 473 DQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIV 532
++E KE AL YHSE++AIA+ L++T P TP+R++KNLRVC DCH AI+++S++ RE+++
Sbjct: 290 EEEEKEPALSYHSEKVAIAFMLLNTAPGTPIRVMKNLRVCADCHMAIQLISKVYDREIVI 111
Query: 533 RDNKRFHHFKDGKCSCGDYW 552
RD RFH F+ GKCSC DYW
Sbjct: 110 RDRSRFHPFRGGKCSCKDYW 51
>BP030332
Length = 466
Score = 108 bits (270), Expect = 2e-24
Identities = 45/100 (45%), Positives = 68/100 (68%)
Frame = -1
Query: 453 MNSMKDAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVC 512
++ +K GY PD V D + + KE L+ HSE++A+A+GL+S P P+ I+KNLR+C
Sbjct: 448 VSRLKLEGYEPDLNQVFLDFESDEKESQLVLHSEKVALAFGLLSLPQGLPIHIVKNLRIC 269
Query: 513 GDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 552
DCH ++++S+I R ++VRD RFHHF G CSC ++W
Sbjct: 268 CDCHTFMQLVSKIYKRRIVVRDQNRFHHFDKGCCSCRNHW 149
>BP066774
Length = 516
Score = 84.0 bits (206), Expect = 6e-17
Identities = 38/80 (47%), Positives = 54/80 (67%)
Frame = -1
Query: 471 DIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGREL 530
+I + +K HSER AIA+GL+++ P P+ + KNL +C CHN +K +S+ V RE+
Sbjct: 501 NIMEASKXDIFCGHSERQAIAFGLLNSAPGMPIWVTKNLYMCQSCHNIVKFISKEVRREI 322
Query: 531 IVRDNKRFHHFKDGKCSCGD 550
VRD +RFHHF+ G CSC D
Sbjct: 321 SVRDAERFHHFRGGICSCMD 262
>AV773273
Length = 356
Score = 59.3 bits (142), Expect(2) = 5e-13
Identities = 35/61 (57%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -3
Query: 488 LAIAYGLI--STPPRTPLRIIKNLRVCGDCHNA-IKIMSRIVGRELIVRDNKRFHHFKDG 544
LAIAYGL ST L ++ RVCGDCHN + +VGRELIVRDNKRFHHF
Sbjct: 354 LAIAYGLT*YSTHAHL-LESLRTFRVCGDCHNRHSRSCPGLVGRELIVRDNKRFHHFTGW 178
Query: 545 K 545
K
Sbjct: 177 K 175
Score = 31.6 bits (70), Expect(2) = 5e-13
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = -1
Query: 542 KDGKCSCGDYW 552
+DGKCSCGDYW
Sbjct: 185 QDGKCSCGDYW 153
>AV413186
Length = 398
Score = 68.9 bits (167), Expect = 2e-12
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Frame = +1
Query: 250 EMYGNCKSMTDARRVFDHMPNR-NMDSWHMMIRGYANSTMGDEGLQLFEQMNELGLEITS 308
+MY C S+ A RVF+ + N+ ++ W+ MI A+ G E + + M G+E
Sbjct: 4 DMYSKCGSLETAWRVFNLVGNKQDVVLWNTMISALAHHGFGTEAMVMLNDMIRSGVEPNR 183
Query: 309 ETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLGQSGYLKEA 363
T + +L+AC + V++ + + M S++G+ P EHY L D+L ++GY E+
Sbjct: 184 ATFVVLLNACSLSGLVQEGLQFFKFMTSEFGVVPDQEHYACLTDLLVRAGYFDES 348
>BP043633
Length = 542
Score = 58.5 bits (140), Expect = 3e-09
Identities = 45/127 (35%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Frame = +1
Query: 33 PNEYGRLP-PHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYR 91
P+ Y R P P PP D N H HH Q P PQ W +P F+ P Q P+
Sbjct: 223 PHGYMRPPQPPPPPPPPPDPNHH--HHFPQIPPPHPPQAPW--YSPQFQYHHPSQTPS-- 384
Query: 92 QQPPPQ-NPNFRPPPPPQNP------NFRPPPPPQNPNFRQPIRQNPNFQPPNGPNRGIN 144
PPPQ P PPPPP NP F PPPPP +PP+ P+
Sbjct: 385 --PPPQWGPPPPPPPPPSNPYSYHPKQFPPPPPPP--------------RPPHPPHPQFP 516
Query: 145 QNQWNPQ 151
+ PQ
Sbjct: 517 PHSHIPQ 537
Score = 45.1 bits (105), Expect = 3e-05
Identities = 33/111 (29%), Positives = 42/111 (37%)
Frame = +1
Query: 68 PQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPI 127
P + + RPPQPP P PPP +PN P PP PPQ P +
Sbjct: 202 PMDSYQQPHGYMRPPQPPPPP-----PPPPDPNHHH----HFPQIPPPHPPQAPWYSPQF 354
Query: 128 RQNPNFQPPNGPNRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPP 178
+ + Q P+ P QW P P+N + Q PPPP
Sbjct: 355 QYHHPSQTPSPP------PQWGPPP---PPPPPPSNPYSYHPKQFPPPPPP 480
>BP038410
Length = 468
Score = 57.8 bits (138), Expect = 5e-09
Identities = 31/116 (26%), Positives = 59/116 (50%)
Frame = -2
Query: 202 GIKADANCFEILFDLCGKSKSVEDAKKVHDYFLQSTFRSDFKMHNKVIEMYGNCKSMTDA 261
G+ A A+ IL G + + K +H Y++Q F S + +I+MY +
Sbjct: 350 GLIASASTVLILLPAAGDTGNFVVGKSLHGYYIQIGFSSHLNVLTALIDMYAKTGLVHWG 171
Query: 262 RRVFDHMPNRNMDSWHMMIRGYANSTMGDEGLQLFEQMNELGLEITSETMLAVLSA 317
R++FD + ++++ W+ +I YA + + E L L ++M G++ S T + +L A
Sbjct: 170 RKIFDSLVDKDVVLWNCLIGNYARNGLVGEALYLLQKMRIQGMKTNSSTFVGLLLA 3
>TC10237 similar to UP|NO75_SOYBN (P08297) Early nodulin 75 precursor (N-75)
(NGM-75), partial (49%)
Length = 803
Score = 55.1 bits (131), Expect = 3e-08
Identities = 31/104 (29%), Positives = 44/104 (41%), Gaps = 7/104 (6%)
Frame = +1
Query: 40 PPHQ---VQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQ----PPQNPNYRQ 92
PPH+ ++PP + H P + P + P P + PPQ P P Y +
Sbjct: 22 PPHEKPPFEKPPLEKPPHEKPPPEYQPPHKKPPSQYQPP-PEYEPPQEKPPPVYLPPYWK 198
Query: 93 QPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPP 136
PP P + PPP P PPP +P + +P +P PP
Sbjct: 199 PPPAYPPPYEKPPPEYEPPQEKPPPVYSPPYERPPTGHPTPYPP 330
Score = 45.8 bits (107), Expect = 2e-05
Identities = 26/89 (29%), Positives = 42/89 (46%), Gaps = 3/89 (3%)
Frame = +1
Query: 91 RQQPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQN--PNFQPP-NGPNRGINQNQ 147
+ QPP + P F PP + P+ +PPP Q P+ + P + P ++PP P
Sbjct: 13 KYQPPHEKPPFEKPPLEKPPHEKPPPEYQPPHKKPPSQYQPPPEYEPPQEKPPPVYLPPY 192
Query: 148 WNPQNGNLNQFQNPNNQFQTPNVQEQAPP 176
W P ++ P +++ P QE+ PP
Sbjct: 193 WKPPPAYPPPYEKPPPEYEPP--QEKPPP 273
Score = 43.5 bits (101), Expect = 9e-05
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +1
Query: 39 LPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPP--QPPQNPNYRQQPPP 96
LPP+ + PP+ + P P ++P P RPP P P + PP
Sbjct: 181 LPPYW-KPPPAYPPPYEKPPPEYEPPQEKPPPVYSP--PYERPPTGHPTPYPPFYHLPPV 351
Query: 97 QNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPP 136
+P + PPP P PP + P+ + PI + P+ +PP
Sbjct: 352 YHPPYEKPPPLYQPPHEKPPIYEPPHEKPPIYEPPHEKPP 471
Score = 38.1 bits (87), Expect = 0.004
Identities = 33/112 (29%), Positives = 45/112 (39%), Gaps = 4/112 (3%)
Frame = +1
Query: 31 AIPNEYGRLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNY 90
A P Y + PP +PP + + P P P P + P P +P Y
Sbjct: 208 AYPPPYEKPPPEY--EPPQEKPPPVYSPPYERPPTGHP----TPYPPFYHLP-PVYHPPY 366
Query: 91 RQQPPP-QNPNFRPP---PPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPPNG 138
+ PP Q P+ +PP PP + P PP + P + P NP PP G
Sbjct: 367 EKPPPLYQPPHEKPPIYEPPHEKPPIYEPPHEKPPLYEPPPGYNP---PPYG 513
Score = 31.6 bits (70), Expect = 0.35
Identities = 24/86 (27%), Positives = 35/86 (39%), Gaps = 5/86 (5%)
Frame = +1
Query: 40 PP--HQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPP--QPP-QNPNYRQQP 94
PP H PP H H + P + Q P+ +PP +PP + P + P
Sbjct: 298 PPTGHPTPYPPFYHLPPVYHPPYEKPPPLY-------QPPHEKPPIYEPPHEKPPIYEPP 456
Query: 95 PPQNPNFRPPPPPQNPNFRPPPPPQN 120
+ P + PPP P + PP +N
Sbjct: 457 HEKPPLYEPPPGYNPPPYGHYPPSKN 534
>AU089102
Length = 480
Score = 54.7 bits (130), Expect = 4e-08
Identities = 32/115 (27%), Positives = 56/115 (47%)
Frame = +2
Query: 296 FEQMNELGLEITSETMLAVLSACGSAEAVEDAYIYLESMKSKYGIEPGVEHYMGLLDVLG 355
F ELG + T + +L+AC A V++ Y + + I+ HY L+D+ G
Sbjct: 5 FGTRQELGFQANDVTYVELLTACSHAGLVDEGIQYFDKLLKNRSIQVKEXHYACLVDLCG 184
Query: 356 QSGYLKEAEEFIEQLPFEPTVTVFETLKNYARIHGDVDLEDHVEELIVSLDPSKA 410
++G LKE IE L + +++V+ L +HG+ D+ V I+ ++ A
Sbjct: 185 RAGRLKEXFYIIEGLGVKLSLSVWGPLLAGCNVHGNADIGKLVTTKILKVEHENA 349
>TC14758 similar to UP|O24601 (O24601) Glycine-rich RNA binding protein 2,
partial (93%)
Length = 725
Score = 54.3 bits (129), Expect = 5e-08
Identities = 31/68 (45%), Positives = 33/68 (47%)
Frame = -1
Query: 74 PQNPNFRPPQPPQNPNYRQQPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNF 133
P P+ RPP PP P PPP P PPPPP P+ RPPPPP P R P
Sbjct: 494 PYPPSRRPP*PPPPPPPYPPPPPP*PR-DPPPPPYPPSRRPPPPPYPPPPRPP------- 339
Query: 134 QPPNGPNR 141
PP P R
Sbjct: 338 -PPPPPPR 318
Score = 50.4 bits (119), Expect = 7e-07
Identities = 27/59 (45%), Positives = 30/59 (50%)
Frame = -1
Query: 81 PPQPPQNPNYRQQPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPPNGP 139
PP PP P+ R PP P PPPPP P PPPPP P+ R P P + PP P
Sbjct: 506 PPSPPYPPSRRPP*PPPPPPPYPPPPPP*PR-DPPPPPYPPSRRPP---PPPYPPPPRP 342
Score = 50.1 bits (118), Expect = 9e-07
Identities = 26/57 (45%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 67 FPQQDWNPQNPNFRPPQPPQNPNYRQQ--PPPQNPNFRPPPPPQNPNFRPPPPPQNP 121
+P P P PP PP P + PPP P+ RPPPPP P RPPPPP P
Sbjct: 491 YPPSRRPP*PPPPPPPYPPPPPP*PRDPPPPPYPPSRRPPPPPYPPPPRPPPPPPPP 321
Score = 48.9 bits (115), Expect = 2e-06
Identities = 27/62 (43%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Frame = -1
Query: 79 FRPPQPPQNPNYRQQP-PPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPPN 137
F PP PP P P PP P+ RPP PP P PPPPP P P P+ +PP
Sbjct: 548 FPPPPPPPLP*REPPPSPPYPPSRRPP*PPPPPPPYPPPPPP*PRDPPPPPYPPSRRPPP 369
Query: 138 GP 139
P
Sbjct: 368 PP 363
Score = 30.4 bits (67), Expect = 0.78
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Frame = -1
Query: 92 QQPPPQNPNFRPPP---------PPQNPNFRPP-PPPQNPNFRQPIRQNPNFQPP 136
Q PPP PPP PP P+ RPP PPP P + P P PP
Sbjct: 551 QFPPPP-----PPPLP*REPPPSPPYPPSRRPP*PPPPPPPYPPPPPP*PRDPPP 402
>TC10410 weakly similar to UP|Q8H5W8 (Q8H5W8) OJ1123_B01.10 protein, partial
(12%)
Length = 431
Score = 50.8 bits (120), Expect(2) = 6e-08
Identities = 39/123 (31%), Positives = 47/123 (37%), Gaps = 6/123 (4%)
Frame = +3
Query: 64 PGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNFRP-----PPPPQNPNFRPPPPP 118
P PQ + P PP PPQNPN P P NPN P P P NPN RP P P
Sbjct: 90 PSSLPQTSSSTTPPISAPPHPPQNPNPTPIPAP-NPNPNPIQIQNPNPIHNPNPRPTPTP 266
Query: 119 QNPNFRQPIRQNPNFQPPNGPNRGINQNQWNPQN-GNLNQFQNPNNQFQTPNVQEQAPPP 177
P +PP NR Q P + + + + +P + P
Sbjct: 267 PQP------------RPPPTFNRAPPPQQQQPSHFSHFSSLPPSSAPSPSPASSFNSTPS 410
Query: 178 PSI 180
PSI
Sbjct: 411 PSI 419
Score = 40.8 bits (94), Expect = 6e-04
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +3
Query: 81 PPQPPQN-PNYRQQPPPQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQPPNGP 139
P QPP + P P P PP PPQNPN P P P NPN QNPN P + P
Sbjct: 78 PLQPPSSLPQTSSSTTP--PISAPPHPPQNPNPTPIPAP-NPNPNPIQIQNPN--PIHNP 242
Query: 140 NRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPPS 179
N P+ P Q Q + + PPS
Sbjct: 243 NPRPTPTPPQPRPPPTFNRAPPPQQQQPSHFSHFSSLPPS 362
Score = 30.8 bits (68), Expect = 0.60
Identities = 23/81 (28%), Positives = 30/81 (36%)
Frame = +3
Query: 41 PHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPN 100
P Q+Q P HN + P P Q P N PP Q P++ P+
Sbjct: 204 PIQIQNPNPIHNPN-------PRPTPTPPQPRPPPTFNRAPPPQQQQPSHFSHFSSLPPS 362
Query: 101 FRPPPPPQNPNFRPPPPPQNP 121
P P P + +F P P P
Sbjct: 363 SAPSPSPAS-SFNSTPSPSIP 422
Score = 29.6 bits (65), Expect = 1.3
Identities = 18/52 (34%), Positives = 23/52 (43%)
Frame = +3
Query: 33 PNEYGRLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQP 84
P + R PP Q QQP H HF+ +AP P +N P+ P P
Sbjct: 282 PPTFNRAPPPQQQQP--SHFSHFSSLPPSSAPSPSPASSFN-STPSPSIPAP 428
Score = 22.7 bits (47), Expect(2) = 6e-08
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1
Query: 40 PPHQVQQPPSDHNQHFNHH 58
PP P + N H+NHH
Sbjct: 37 PPLGAPLNPHNLNHHYNHH 93
>TC17113 weakly similar to UP|Q9LFU8 (Q9LFU8) Proline-rich protein, partial
(25%)
Length = 1077
Score = 52.4 bits (124), Expect = 2e-07
Identities = 48/129 (37%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Frame = +1
Query: 74 PQNPNFRPP------QPPQNPNYRQQPPPQNPN-FRPPPPPQNPNFRPPPPPQNPNFRQP 126
P P F PP QPP PN QPPP PN F+PPP NP F+P PPP P+ QP
Sbjct: 385 PPIPFFPPPLIPNPFQPPLVPN-PFQPPPLIPNPFQPPPLIPNP-FQPSPPPLLPDPFQP 558
Query: 127 IRQNP----NFQPPNGPNRGINQNQWNPQNGNL--NQFQNPNNQ-----------FQTPN 169
P FQPP+ P N Q P N FQ P ++ P
Sbjct: 559 PSPPPLFPNPFQPPSPPPLIPNPFQPPPSPPPFIPNPFQPPPSKQPPSPLFPFPPIVIPG 738
Query: 170 VQEQAPPPP 178
+ PPPP
Sbjct: 739 LTPPPPPPP 765
Score = 48.9 bits (115), Expect = 2e-06
Identities = 46/129 (35%), Positives = 52/129 (39%), Gaps = 21/129 (16%)
Frame = +1
Query: 32 IPNEYGRLP--PHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPN-FRPPQPPQN- 87
+PN + P P+ Q PP N F P F P PN F+PP PP
Sbjct: 442 VPNPFQPPPLIPNPFQPPPLIPNP-FQPSPPPLLPDPFQPPSPPPLFPNPFQPPSPPPLI 618
Query: 88 PNYRQ---QPPPQNPN-FRPPPPPQNPN-------------FRPPPPPQNPNFRQPIRQN 130
PN Q PPP PN F+PPP Q P+ PPPPP P F P
Sbjct: 619 PNPFQPPPSPPPFIPNPFQPPPSKQPPSPLFPFPPIVIPGLTPPPPPPPPPPFFPPF--P 792
Query: 131 PNFQPPNGP 139
P F PP P
Sbjct: 793 PLFPPPGRP 819
Score = 45.4 bits (106), Expect = 2e-05
Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 11/115 (9%)
Frame = +1
Query: 32 IPNEYGRLPPHQVQ---QPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNP 88
IPN + PP + QPPS N + P P P +P P P Q P
Sbjct: 502 IPNPFQPSPPPLLPDPFQPPSPPPLFPNPFQPPSPPPLIPNPFQPPPSPPPFIPNPFQPP 681
Query: 89 NYRQQPPPQNPN--------FRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQP 135
+Q P P P PPPPP P F PP PP P +P N P
Sbjct: 682 PSKQPPSPLFPFPPIVIPGLTPPPPPPPPPPFFPPFPPLFPPPGRPPISTKNSSP 846
>BI420337
Length = 397
Score = 50.8 bits (120), Expect = 6e-07
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Frame = +1
Query: 10 SLKLRSNYIHGNHFCKTLSTSAIPNEYGRLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQ 69
SL L I N++ T P Y PP PP H+++ P
Sbjct: 52 SLNLLPIQISANNYIYTSPPPPKPYYYHSPPPPMHSPPPP------YHYSSPPPP----- 198
Query: 70 QDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNF---RPPPPPQNPNFRPPPPPQNPNFRQP 126
P+ P P PP Y+ PPP+ P + PPPPP+NP P PPP ++ P
Sbjct: 199 ----PKKPYKYPSPPPPVYKYK-SPPPRTPAYYYKSPPPPPKNPYKYPSPPPPVYKYKSP 363
Query: 127 IRQNPNFQPPNGP 139
P PP+ P
Sbjct: 364 --PPPFKYPPHLP 396
Score = 44.7 bits (104), Expect = 4e-05
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Frame = +1
Query: 79 FRPPQPPQNPNYRQQPPPQN---PNFR---PPPPPQNPNFRPPPPPQNPNFRQPIRQNPN 132
+ P PP+ Y PPP + P + PPPPP+ P P PPP ++ P + P
Sbjct: 97 YTSPPPPKPYYYHSPPPPMHSPPPPYHYSSPPPPPKKPYKYPSPPPPVYKYKSPPPRTPA 276
Query: 133 FQPPNGPNRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPP 178
+ + P P N ++ +P P + ++PPPP
Sbjct: 277 YYYKSPP----------PPPKNPYKYPSP----PPPVYKYKSPPPP 372
>TC16018 UP|Q8MZB8 (Q8MZB8) AT15479p (CG31542-PA), partial (7%)
Length = 425
Score = 50.4 bits (119), Expect = 7e-07
Identities = 35/130 (26%), Positives = 52/130 (39%), Gaps = 2/130 (1%)
Frame = +2
Query: 49 SDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNFRPPPPPQ 108
+ H H +HHN + + D Q+PN+ PP P P N PPP Q
Sbjct: 65 NSHATHTHHHNNR-------RDDDEEQHPNYPPP-----PGSTGSPYSSFNNPYPPPQQQ 208
Query: 109 NPNFRPP--PPPQNPNFRQPIRQNPNFQPPNGPNRGINQNQWNPQNGNLNQFQNPNNQFQ 166
P + P PPPQ P P P+ PP+ P + + G+++ ++
Sbjct: 209 PPFYGEPHRPPPQQP----PFYGEPHRPPPSQPETNVFHTSHDVTYGHVSHPPQSHHPDH 376
Query: 167 TPNVQEQAPP 176
+PN PP
Sbjct: 377 SPNYGYPVPP 406
Score = 26.9 bits (58), Expect = 8.6
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +2
Query: 33 PNEYG---RLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPN 89
P YG R PP Q P + H +H T PQ +PN+ P PP
Sbjct: 251 PPFYGEPHRPPPSQ----PETNVFHTSHDVTYGHVSHPPQSHHPDHSPNYGYPVPP---- 406
Query: 90 YRQQPP 95
QQPP
Sbjct: 407 -AQQPP 421
>AV427333
Length = 387
Score = 50.4 bits (119), Expect = 7e-07
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Frame = +3
Query: 77 PNFRPPQPPQNPNYRQQPP-PQNPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQP 135
PNF P P P++ PP P + F PPP P + F+ PPPP + +F P R +P+ P
Sbjct: 57 PNFYFPHFPPPPSHPYNPPTPPSHPFNPPPTPSH-YFKSPPPPSH-SFAPPPRGHPS-PP 227
Query: 136 PNGPNRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPP 178
P+ P + + + P ++ +P++ TP + PPPP
Sbjct: 228 PSSPPPP-SSHPFTPPPPHVRPPPSPHHPI-TPPPHVRPPPPP 350
Score = 49.7 bits (117), Expect = 1e-06
Identities = 29/79 (36%), Positives = 40/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 68 PQQDWNPQNPNFRPPQPPQNPN-YRQQPPPQNPNFRPPPPPQNPNFRP--PPPPQNPNFR 124
P +NP P P PP P+ Y + PPP + +F PPP +P+ P PPPP + F
Sbjct: 90 PSHPYNPPTPPSHPFNPPPTPSHYFKSPPPPSHSFAPPPRG-HPSPPPSSPPPPSSHPFT 266
Query: 125 QPIRQNPNFQPPNGPNRGI 143
P P+ +PP P+ I
Sbjct: 267 PP---PPHVRPPPSPHHPI 314
Score = 41.2 bits (95), Expect = 4e-04
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = +3
Query: 33 PNEYGRLPP---HQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPP----QPP 85
P+ Y + PP H PP H P P P + F PP +PP
Sbjct: 150 PSHYFKSPPPPSHSFAPPPRGH------------PSPPPSSPPPPSSHPFTPPPPHVRPP 293
Query: 86 QNPNYRQQPPPQNPNFRPPPPPQNPNFRP 114
+P++ PPP + RPPPPP P+ P
Sbjct: 294 PSPHHPITPPP---HVRPPPPPLPPSPSP 371
>TC10062 similar to BAD08700 (BAD08700) Cold shock domain protein 2, partial
(66%)
Length = 481
Score = 50.1 bits (118), Expect = 9e-07
Identities = 35/117 (29%), Positives = 52/117 (43%), Gaps = 11/117 (9%)
Frame = -1
Query: 77 PNFRPPQP-PQNPNYRQQPPPQNPNFRPPPPPQNPNFRP---PPPPQNPNFRQPIRQNPN 132
P + PP P P P Y PPP P RPPPP P + P PPPP+ P P R+ P
Sbjct: 439 PPYPPPPP*PPLPPY-PPPPPYPPPPRPPPP*PPPPYPPPP*PPPPRPPPPAPPPRRVPC 263
Query: 133 FQPPNGPNRGINQNQWNPQNGNLNQFQNPNNQFQTPN-------VQEQAPPPPSIVD 182
P GP I + + +N +P+ + + P+ + +PP +++
Sbjct: 262 TAWPLGPVTSIALARPSGSEATMNSTSSPSPRHRKPSDLISDW*TKRSSPPSSGVMN 92
Score = 47.4 bits (111), Expect = 6e-06
Identities = 32/77 (41%), Positives = 35/77 (44%), Gaps = 2/77 (2%)
Frame = -1
Query: 74 PQNPNFRPPQPPQNPNYRQQPP-PQNPNFRPPPPPQNPNFRPPPP-PQNPNFRQPIRQNP 131
P P PP+PP P Y PP P P + PPPPP P RPPPP P P P P
Sbjct: 475 PPPPPRPPPRPP--PPYPPPPP*PPLPPY-PPPPPYPPPPRPPPP*PPPPYPPPP*PPPP 305
Query: 132 NFQPPNGPNRGINQNQW 148
PP P R + W
Sbjct: 304 RPPPPAPPPRRVPCTAW 254
>BP044109
Length = 497
Score = 50.1 bits (118), Expect = 9e-07
Identities = 38/113 (33%), Positives = 48/113 (41%), Gaps = 15/113 (13%)
Frame = +3
Query: 40 PPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPN-FRPPQP--------PQNPNY 90
PPH S H +HH T+ R P PN R P+P P +P+
Sbjct: 75 PPHSPPLTSSLLRHHHHHHRTRT---RQPHHTLPTLPPNQHRAPKPRLHLRRLLPHHPSL 245
Query: 91 RQQPPPQNPNF---RPPPPPQNPNFRPPP---PPQNPNFRQPIRQNPNFQPPN 137
QP PQNP +PPPPP +P P PPQ P +P R+ PP+
Sbjct: 246 LHQPSPQNPPLLPRKPPPPPHMARLQPFPPLHPPQLPPRLRP-RRALQMAPPS 401
Score = 37.7 bits (86), Expect = 0.005
Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 1/136 (0%)
Frame = +2
Query: 45 QQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNFRPP 104
QQPP +H ++ + + P P PP PP N N N +
Sbjct: 29 QQPPHTATTSLSHSSSTS----LSSSHFFPSPP---PPPPPPNKNKTTPSHASNATSKST 187
Query: 105 PPPQNPNFRPPPPPQNPN-FRQPIRQNPNFQPPNGPNRGINQNQWNPQNGNLNQFQNPNN 163
P Q P PP P +P P+ PP P+ + +G +P +
Sbjct: 188 PRTQTPTTPPPSPTSSPKPPPSTFATKPSTSPPETPS--------SSSHGPAPTLPSPPS 343
Query: 164 QFQTPNVQEQAPPPPS 179
TP P PP+
Sbjct: 344 S-STPTSTPSPPSPPN 388
Score = 34.7 bits (78), Expect = 0.041
Identities = 32/112 (28%), Positives = 43/112 (37%), Gaps = 19/112 (16%)
Frame = +3
Query: 94 PPPQNPNFRPPPPPQNPNFRPPPPPQNP----------------NFRQPIRQNPNFQPPN 137
PP QN N P PP +F PPP +P RQP P PPN
Sbjct: 12 PPGQNNNNHPTPPLL--HFLTLPPPHSPPLTSSLLRHHHHHHRTRTRQPHHTLPTL-PPN 182
Query: 138 ---GPNRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPPSIVDLTRF 186
P ++ + P + +L +P N P + + PPPP + L F
Sbjct: 183 QHRAPKPRLHLRRLLPHHPSLLHQPSPQN---PPLLPRKPPPPPHMARLQPF 329
Score = 31.6 bits (70), Expect = 0.35
Identities = 32/131 (24%), Positives = 43/131 (32%), Gaps = 23/131 (17%)
Frame = +2
Query: 28 STSAIPNEYGRLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQN 87
STS + + PP PP + N+ H NA + + P P PP P +
Sbjct: 74 STSLSSSHFFPSPPPP--PPPPNKNKTTPSH-ASNATSKSTPRTQTPTTP---PPSPTSS 235
Query: 88 PNYRQQPPPQN----PNFRPPPPPQNPNF-------------------RPPPPPQNPNFR 124
P +PPP P+ PP P + + PP PP
Sbjct: 236 P----KPPPSTFATKPSTSPPETPSSSSHGPAPTLPSPPSSSTPTSTPSPPSPPNGSTLP 403
Query: 125 QPIRQNPNFQP 135
P R P P
Sbjct: 404 SPPRATPTPAP 436
>AU251550
Length = 329
Score = 49.7 bits (117), Expect = 1e-06
Identities = 35/97 (36%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Frame = +2
Query: 48 PSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPP---QNPNFRPP 104
P DH PG P NP PP PPQ P Y PPP ++P P
Sbjct: 14 PHDHRHWPPQPGPPGPPGPPPPGYHNPP-----PPGPPQPPGYYNPPPPGPPRDPYAPAP 178
Query: 105 PPPQNPNFRPPPP--PQNPNFRQPIRQNPNFQPPNGP 139
PPP + PPPP P +P Q P PP GP
Sbjct: 179 PPPPFGHHHPPPPHGPPSPPPPAMFYQPP---PPPGP 280
Score = 43.9 bits (102), Expect = 7e-05
Identities = 31/90 (34%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Frame = +2
Query: 33 PNEYGRLPPHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNP-NFRPPQPPQNPNYR 91
P Y PP QPP +N P R P P P P PP P
Sbjct: 74 PPGYHNPPPPGPPQPPGYYNP------PPPGPPRDPYAPAPPPPPFGHHHPPPPHGP--- 226
Query: 92 QQPPPQNPNFRPPPPPQNPNFRPPPPPQNP 121
PPP ++PPPPP P PP PP P
Sbjct: 227 PSPPPPAMFYQPPPPPGPPG--PPQPPHPP 310
Score = 40.4 bits (93), Expect = 8e-04
Identities = 27/86 (31%), Positives = 31/86 (35%), Gaps = 2/86 (2%)
Frame = +2
Query: 33 PNEYGRLPPHQVQQP--PSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNY 90
P Y PP + P P+ F HH+ P PP PP +
Sbjct: 119 PGYYNPPPPGPPRDPYAPAPPPPPFGHHHPP---------------PPHGPPSPPPPAMF 253
Query: 91 RQQPPPQNPNFRPPPPPQNPNFRPPP 116
Q PPP P PP PP P PPP
Sbjct: 254 YQPPPPPGPP-GPPQPPHPPGPGPPP 328
>BI418940
Length = 550
Score = 49.3 bits (116), Expect = 2e-06
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Frame = +1
Query: 82 PQPPQNPNYRQQPPPQNPNFRPPPPP---QNPNFRPPPPPQNPNFRQPIRQNPNFQPPNG 138
P P QN + P + + PPPPP Q RPPPP PNF PI P PP+
Sbjct: 58 PPPSQNNPHFD*PFSFSFSAPPPPPPLHLQLRRRRPPPPENIPNFDNPISAPP---PPHF 228
Query: 139 PNRGINQNQWNPQNGNLNQFQNPNNQFQTPNVQEQAPPPPSIVDLTRFCQEGKVKEAL 196
R Q Q P L++ + PN+ PPPP I R + K+++ L
Sbjct: 229 QLRRRRQPQHQPTLPLLSE--------KNPNISAPPPPPPLIHLRLRHRRPPKLQQPL 378
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Frame = +1
Query: 47 PPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQ---PPPQN----- 98
PPS +N HF+ + + P + Q RPP P PN+ PPP +
Sbjct: 61 PPSQNNPHFD*PFSFSFSAPPPPPPLHLQLRRRRPPPPENIPNFDNPISAPPPPHFQLRR 240
Query: 99 ---PNFRPPPP---PQNPNF-RPPPPPQNPNFRQPIRQNPNFQPP 136
P +P P +NPN PPPPP + R R+ P Q P
Sbjct: 241 RRQPQHQPTLPLLSEKNPNISAPPPPPPLIHLRLRHRRPPKLQQP 375
Score = 31.6 bits (70), Expect = 0.35
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 91 RQQPPPQNPNFRPPPPPQNPNFRPPPP 117
+ QP P +P+ PP PP P PPP
Sbjct: 450 KHQPIPPSPSSLPPTPPPPPPISTPPP 530
Score = 29.6 bits (65), Expect = 1.3
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +3
Query: 22 HFCKTLSTSAIPNEYGRLPPHQVQQPP----SDHNQHFNHHNTQNAPGRFPQQDWNPQNP 77
HFC T S ++ P Q P S+++ ++H+ Q + P +P
Sbjct: 297 HFCSTTSAASYPPPTPAPATTQTPTTPPLPLSENSGKLSNHSQQVIAL*RAKHQPIPPSP 476
Query: 78 NFRPPQPPQNPNYRQQPP 95
+ PP PP P PP
Sbjct: 477 SSLPPTPPPPPPISTPPP 530
Score = 23.5 bits (49), Expect(2) = 2.6
Identities = 9/22 (40%), Positives = 11/22 (49%)
Frame = +3
Query: 105 PPPQNPNFRPPPPPQNPNFRQP 126
P P +P+ PP PP P P
Sbjct: 459 PIPPSPSSLPPTPPPPPPISTP 524
Score = 23.5 bits (49), Expect(2) = 2.6
Identities = 17/67 (25%), Positives = 26/67 (38%)
Frame = +1
Query: 44 VQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFRPPQPPQNPNYRQQPPPQNPNFRP 103
+ PP H Q Q+ P P + +NPN P PP + + + P +
Sbjct: 202 ISAPPPPHFQLRRRRQPQHQP-TLPL--LSEKNPNISAPPPPPPLIHLRLRHRRPPKLQQ 372
Query: 104 PPPPQNP 110
P P +P
Sbjct: 373 PLPFHSP 393
>TC10928 weakly similar to PIR|G96668|G96668 protein F1N19.7 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 590
Score = 48.9 bits (115), Expect = 2e-06
Identities = 36/113 (31%), Positives = 47/113 (40%), Gaps = 9/113 (7%)
Frame = -3
Query: 41 PHQVQQPPSDHNQHFNHHNTQNAPGRFPQQDWNPQNPNFR-PPQPPQNPNYRQQPPPQNP 99
P++ Q P H+ H NH + +P +P +P PP PP PN P Q P
Sbjct: 447 PNKAQTWP--HHTHHNHISLPLSP-HVSHSRSDPTDPTHSAPPTPPTRPN---TSPSQTP 286
Query: 100 NFRPPPPPQNPNFRPPPPPQNPNFRQPIRQN--------PNFQPPNGPNRGIN 144
+ PPPP PPPPP P+ R P + PP P+ G N
Sbjct: 285 SAAAPPPP------PPPPPAAPSPLSETRSGAPRHARPPPLYAPPAPPSPGCN 145
Score = 27.7 bits (60), Expect(2) = 0.97
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 98 NPNFRPPPPPQNPNFRPPPPPQNPNFRQPIRQNPNFQ-PPNGPNRGINQNQWNP 150
N N + PP + PP P P P+ F+ PN P+ + N NP
Sbjct: 475 NTNLQLPPQSKQGTNLAPPHPSQPYLPTPLSTRVAFKIRPNRPDSFSSTNSSNP 314
Score = 20.8 bits (42), Expect(2) = 0.97
Identities = 7/13 (53%), Positives = 8/13 (60%)
Frame = -3
Query: 166 QTPNVQEQAPPPP 178
QTP+ PPPP
Sbjct: 294 QTPSAAAPPPPPP 256
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,730,746
Number of Sequences: 28460
Number of extensions: 325189
Number of successful extensions: 12150
Number of sequences better than 10.0: 912
Number of HSP's better than 10.0 without gapping: 3699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7159
length of query: 552
length of database: 4,897,600
effective HSP length: 95
effective length of query: 457
effective length of database: 2,193,900
effective search space: 1002612300
effective search space used: 1002612300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC148348.6