BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148345.14 - phase: 0 /pseudo
(744 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780136 294 3e-80
AV776848 291 2e-79
TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-bi... 62 4e-10
TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG... 50 1e-06
TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory pro... 47 1e-05
BP038344 45 3e-05
TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snR... 42 5e-04
AV413963 40 0.001
TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%) 40 0.001
TC18334 weakly similar to UP|Q9LHN3 (Q9LHN3) Emb|CAB63739.1 (AT3... 40 0.001
TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragm... 40 0.002
TC14937 similar to UP|Q9FN19 (Q9FN19) Genomic DNA, chromosome 5,... 39 0.004
TC8529 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interac... 37 0.009
TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial... 37 0.009
CB826976 36 0.020
TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Ar... 36 0.020
TC19190 weakly similar to PIR|T46032|T46032 WD-40 repeat regulat... 35 0.033
BP077669 35 0.044
TC9007 similar to UP|Q9SSS7 (Q9SSS7) F6D8.2 protein (At1g52730),... 35 0.044
AV768303 34 0.097
>AV780136
Length = 558
Score = 294 bits (753), Expect = 3e-80
Identities = 148/181 (81%), Positives = 160/181 (87%), Gaps = 4/181 (2%)
Frame = -1
Query: 223 ALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVLFI----R 278
ALAM+EGG++LVSGGTEKV+RVWD RSGSK LKL+GH DNIRALLLDSTGR
Sbjct: 558 ALAMNEGGTVLVSGGTEKVIRVWDPRSGSKTLKLRGHADNIRALLLDSTGRYCLSGSSDS 379
Query: 279 IIRFYDKGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDFSLYLTDLQTRESSLLCTG 338
+IR +D GQ RC+H+YAVHTDSVWALASTPTFSHVYSGGRDFSLYLTDLQTRESSLLCTG
Sbjct: 378 MIRLWDIGQPRCLHTYAVHTDSVWALASTPTFSHVYSGGRDFSLYLTDLQTRESSLLCTG 199
Query: 339 EHPIRQLALHNDSIWVASTDSSVHRWPAEGCDPQKIFQRGNSFLAGNLSFSRARVSLEGS 398
EHPIRQLALH+DSIWVASTDSSVH+WPAEG +PQKIF RGNSFLAGNLSFSRA EGS
Sbjct: 198 EHPIRQLALHDDSIWVASTDSSVHKWPAEGSNPQKIFLRGNSFLAGNLSFSRAGCH-EGS 22
Query: 399 T 399
T
Sbjct: 21 T 19
>AV776848
Length = 584
Score = 291 bits (746), Expect = 2e-79
Identities = 138/156 (88%), Positives = 143/156 (91%)
Frame = +3
Query: 1 MHRVASTGNANNSTRPRKEKRLTYVLNDSDDTKHCAGINCLALLTSTISDGSDYLFTGSR 60
MHRV S GN +NSTRPRKEKR TYVLNDSD TKHCAGINCLALLTS SDGSDYLFTGSR
Sbjct: 117 MHRVGSAGNTSNSTRPRKEKRFTYVLNDSDGTKHCAGINCLALLTSAASDGSDYLFTGSR 296
Query: 61 DGRLKRWALAEDAATCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNALSAGTCVR 120
DGRLKRWALAEDA TCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNA S G+C R
Sbjct: 297 DGRLKRWALAEDAVTCSATFESHVDWVNDAVLVGDNTLVSCSSDTTLKTWNAFSVGSCTR 476
Query: 121 THRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDI 156
T RQH+DYVTCLAAAGKN NIVASGGLGGEVF+WD+
Sbjct: 477 TLRQHSDYVTCLAAAGKNCNIVASGGLGGEVFIWDL 584
>TC7876 homologue to UP|GBLP_SOYBN (Q39836) Guanine nucleotide-binding
protein beta subunit-like protein, complete
Length = 1379
Score = 61.6 bits (148), Expect = 4e-10
Identities = 62/218 (28%), Positives = 91/218 (41%), Gaps = 7/218 (3%)
Frame = +3
Query: 46 STISDGSDYLFTGSRDGRLKRWALAEDAATCSAT---FESHVDWVNDAVLVGDNTL-VSC 101
+T D SD + T SRD + W L ++ T H +V D VL D +S
Sbjct: 135 ATPIDNSDMIVTASRDKSIILWHLTKEDKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSG 314
Query: 102 SSDTTLKTWNALSAGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAALA 161
S D L+ W+ L+AGT R HT V +A + N IV S + +W+
Sbjct: 315 SWDGELRLWD-LAAGTSARRFVGHTKDVLSVAFSIDNRQIV-SASRDRTIKLWNTLGECK 488
Query: 162 PVSKCNDAMVDESSNGINGSANLLPSTNLRTISSS---HSISLHTAQTQGYIPIAAKGHK 218
+ NDA D S PST TI S+ ++ + T + GH
Sbjct: 489 YTIQDNDAHSDWVS-----CVRFSPSTLQPTIVSASWDRTVKVWNL-TNCKLRNTLAGHS 650
Query: 219 ESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKL 256
V +A+ GS+ SGG + V+ +WD G ++ L
Sbjct: 651 GYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL 764
Score = 57.0 bits (136), Expect = 1e-08
Identities = 69/292 (23%), Positives = 117/292 (39%), Gaps = 22/292 (7%)
Frame = +3
Query: 43 LLTSTISDGSDYLFTGSRDGRLKRWALAEDAATCSATFESHVDWVNDAVLVGDN---TLV 99
+L+ S + + + SRD +K W + ++H DWV+ T+V
Sbjct: 393 VLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDNDAHSDWVSCVRFSPSTLQPTIV 572
Query: 100 SCSSDTTLKTWNALSAGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAA 159
S S D T+K WN L+ T H+ YV +A + + ++ ASGG G + +WD+
Sbjct: 573 SASWDRTVKVWN-LTNCKLRNTLAGHSGYVNTVAVS-PDGSLCASGGKDGVILLWDLAEG 746
Query: 160 LAPVSKCNDAMVDE---SSNGINGSANLLPSTNLRTISSSHSISLHTAQTQGYIPIAAKG 216
S +++ S N A S + + S + + G
Sbjct: 747 KRLYSLDAGSIIHALCFSPNRYWLCAATETSIKIWDLESKSIVEDLKVDLKTEADATTGG 926
Query: 217 H---KESVYALAMD--EGGSILVSGGTEKVVRVWDTRS---GSKILKLKGHTDNIRALLL 268
+ K+ +Y +++ GS L SG T+ V+RVW ++ + + I L+
Sbjct: 927 NTNKKKVIYCTSLNWSADGSTLFSGYTDGVIRVWAIGRY**SFSVISCQ-NLFPIFVLIR 1103
Query: 269 DSTGRVLFIRIIRFYDKGQ--------QRCVHSYAVHTDSVWALASTPTFSH 312
D + RII F DK C SY +H ++W S+P + H
Sbjct: 1104DQASYPFYSRIILF*DKWLCGRFYLT*NVCFGSYDMHISTLW-FGSSPFYEH 1256
Score = 36.2 bits (82), Expect = 0.020
Identities = 52/298 (17%), Positives = 96/298 (31%), Gaps = 51/298 (17%)
Frame = +3
Query: 121 THRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAALAPVSKCNDAMVDESSNGING 180
T R HTD VT +A NS+++ + + +W + ++ + G+
Sbjct: 99 TMRAHTDQVTAIATPIDNSDMIVTASRDKSIILWHLTK-------------EDKTYGV-- 233
Query: 181 SANLLPSTNLRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAMDEGGSILVSGGTEK 240
P L GH V + + G +SG +
Sbjct: 234 -----PRRRLT------------------------GHSHFVQDVVLSSDGQFALSGSWDG 326
Query: 241 VVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVL------------------------- 275
+R+WD +G+ + GHT ++ ++ R +
Sbjct: 327 ELRLWDLAAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIQDN 506
Query: 276 -----FIRIIRFYDKGQQRCV--------------------HSYAVHTDSVWALASTPTF 310
++ +RF Q + ++ A H+ V +A +P
Sbjct: 507 DAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDG 686
Query: 311 SHVYSGGRDFSLYLTDLQTRESSLLCTGEHPIRQLALHNDSIWV-ASTDSSVHRWPAE 367
S SGG+D + L DL + I L + W+ A+T++S+ W E
Sbjct: 687 SLCASGGKDGVILLWDLAEGKRLYSLDAGSIIHALCFSPNRYWLCAATETSIKIWDLE 860
>TC16076 weakly similar to GB|AAG32022.1|11141605|AF277458 LEUNIG
{Arabidopsis thaliana;} , partial (24%)
Length = 1048
Score = 50.4 bits (119), Expect = 1e-06
Identities = 58/282 (20%), Positives = 114/282 (39%), Gaps = 6/282 (2%)
Frame = +3
Query: 49 SDGSDYLFTGSRDGRLKRWALAEDAATCSATFESHVDWVNDAVLVGDNT-LVSCSSDTTL 107
SDG L + D ++ W + D +T E H ++D +++ L + S D ++
Sbjct: 24 SDGK-MLASAGDDKKVVLWNM--DTLQTESTPEQHKSVISDVRFRPNSSQLATASIDKSV 194
Query: 108 KTWNALSAGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAALAPVSKCN 167
+ W+A + CV+ + H+ + L K ++I E+ W+I + S C
Sbjct: 195 RLWDAANPTYCVQEYNGHSSAIMSLDFHPKKTDIFCFCDSANEIRYWNITS-----SSCT 359
Query: 168 DAMVDESSNGINGSANLLPST-NLRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAM 226
S G + P + + +S +S+ ++ I +GH E V ++
Sbjct: 360 -----RVSKGGSSQVRFQPRIGQVLSAASD*VVSIFDVESDRQI-YTLQGHPEPVNSICW 521
Query: 227 DEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVLFI----RIIRF 282
D G L S + +V++W SG I +L + + + + L + +
Sbjct: 522 DVNGDFLAS-VSPNLVKIWSLTSGECIQELSSSGNQFYSCVFHPSYSTLLVIGGFSSLEL 698
Query: 283 YDKGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDFSLYL 324
++ + + + + H + ALA +P V S D S+ L
Sbjct: 699 WNMADNKSM-TISAHESVISALAQSPVTGMVASASHDNSVKL 821
>TC12572 similar to PIR|T46032|T46032 WD-40 repeat regulatory protein tup1
homolog - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (51%)
Length = 770
Score = 47.0 bits (110), Expect = 1e-05
Identities = 40/167 (23%), Positives = 73/167 (42%), Gaps = 25/167 (14%)
Frame = +3
Query: 217 HKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVLF 276
H + V A+ + GS++VS + + R+WD +G +K +N + + F
Sbjct: 36 HSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGH-CMKTLIDDENPPVSFVKFSPNAKF 212
Query: 277 IRI------IRFYDKGQQRCVHSYAVHTDSVWALASTPTFS---HVYSGGRDFSLYLTDL 327
I + +R ++ R + +Y H +S + ++ST + + +V G D +YL +L
Sbjct: 213 ILVGTLDNNLRLWNYSTGRFLKTYTGHVNSKYCISSTFSTTNGKYVVGGSEDHGIYLWEL 392
Query: 328 QTRE---------SSLLCTGEHPIRQL----ALHND---SIWVASTD 358
QTR+ +++ HP + AL ND IW D
Sbjct: 393 QTRKIVQKLEGHSDTVVSVSCHPTENMIASGALGNDKTVKIWTQQKD 533
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/153 (18%), Positives = 67/153 (42%), Gaps = 4/153 (2%)
Frame = +3
Query: 115 AGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAALAPVSKCNDAMVDES 174
+G C++ H+D VT + ++ +++ S G +WD A C ++D+
Sbjct: 6 SGKCLKVLPAHSDPVTAVDF-NRDGSLIVSSSYDGLCRIWD-----ASTGHCMKTLIDDE 167
Query: 175 SNGINGSANLLPSTNLRTISS-SHSISLHTAQTQGYIPIAAKGHKESVYALAMD---EGG 230
+ ++ P+ + + +++ L T ++ GH S Y ++ G
Sbjct: 168 NPPVS-FVKFSPNAKFILVGTLDNNLRLWNYSTGRFLKTYT-GHVNSKYCISSTFSTTNG 341
Query: 231 SILVSGGTEKVVRVWDTRSGSKILKLKGHTDNI 263
+V G + + +W+ ++ + KL+GH+D +
Sbjct: 342 KYVVGGSEDHGIYLWELQTRKIVQKLEGHSDTV 440
>BP038344
Length = 525
Score = 45.4 bits (106), Expect = 3e-05
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 216 GHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVL 275
GH E + LA + S ++ +R+WD G + L+GHT + + + +
Sbjct: 218 GHSEGISDLAWSSDSHYICSASDDRTLRIWDATGGDCVKTLRGHTHAVFCVNFNPQSNYI 397
Query: 276 ----FIRIIRFYDKGQQRCVHSYAVHT 298
F +R ++ RC+H+ HT
Sbjct: 398 VSGSFDETVRVWEVKTGRCIHTIIAHT 478
Score = 41.2 bits (95), Expect = 6e-04
Identities = 34/157 (21%), Positives = 71/157 (44%)
Frame = +2
Query: 119 VRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAALAPVSKCNDAMVDESSNGI 178
++T H V C+ + + ++AS L + +W A L+ + + S GI
Sbjct: 77 LKTLTAHDAAVACVKFSN-DGTLLASASLDKTLIIWS-SATLSLLHRLTG-----HSEGI 235
Query: 179 NGSANLLPSTNLRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAMDEGGSILVSGGT 238
+ A S + + S ++ + A T G +GH +V+ + + + +VSG
Sbjct: 236 SDLAWSSDSHYICSASDDRTLRIWDA-TGGDCVKTLRGHTHAVFCVNFNPQSNYIVSGSF 412
Query: 239 EKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVL 275
++ VRVW+ ++G I + HT + ++ + G ++
Sbjct: 413 DETVRVWEVKTGRCIHTIIAHTMPVTSVHFNRDGTLI 523
>TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snRNP-specific
40 kDa protein (hPrp8-binding) {Homo sapiens;} , partial
(43%)
Length = 719
Score = 41.6 bits (96), Expect = 5e-04
Identities = 20/63 (31%), Positives = 31/63 (48%)
Frame = +1
Query: 215 KGHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRV 274
KGHK +V L G+ +VS +K VRVWD +G ++ K+ H + + G
Sbjct: 424 KGHKNAVLDLHWTTDGTQIVSASPDKTVRVWDVETGKQVKKMVEHLSYVNSCCPSRRGPP 603
Query: 275 LFI 277
L +
Sbjct: 604 LVV 612
Score = 33.5 bits (75), Expect = 0.13
Identities = 28/123 (22%), Positives = 53/123 (42%), Gaps = 6/123 (4%)
Frame = +1
Query: 216 GHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSK-ILKLKGHTDNIRALLLDSTGRV 274
GH+ +Y + + G+++ SG ++ + +W+ K + LKGH + + L + G
Sbjct: 298 GHQSVIYTMKFNPAGTVIASGSHDREIFLWNVHGECKNFMVLKGHKNAVLDLHWTTDGTQ 477
Query: 275 LFI----RIIRFYDKGQQRCVHSYAVHTDSVWALA-STPTFSHVYSGGRDFSLYLTDLQT 329
+ + +R +D + V H V + S V SG D + L D++
Sbjct: 478 IVSASPDKTVRVWDVETGKQVKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQ 657
Query: 330 RES 332
R S
Sbjct: 658 RGS 666
Score = 27.7 bits (60), Expect = 6.9
Identities = 27/144 (18%), Positives = 54/144 (36%), Gaps = 1/144 (0%)
Frame = +1
Query: 111 NALSAGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDIEAALAPVSKCNDAM 170
++L + + T Q Y AG ++ASG E+F+W++ +C + M
Sbjct: 265 SSLESPIMLLTGHQSVIYTMKFNPAG---TVIASGSHDREIFLWNVHG------ECKNFM 417
Query: 171 VDES-SNGINGSANLLPSTNLRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAMDEG 229
V + N + T + + S ++ + +T + + G
Sbjct: 418 VLKGHKNAVLDLHWTTDGTQIVSASPDKTVRVWDVETGKQVKKMVEHLSYVNSCCPSRRG 597
Query: 230 GSILVSGGTEKVVRVWDTRSGSKI 253
++VSG + ++WD R I
Sbjct: 598 PPLVVSGSDDGTAKLWDMRQRGSI 669
>AV413963
Length = 313
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +2
Query: 216 GHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGS----KILKLKGHTDNIRALLLD 269
GHK+ V+++A + G+ L SG ++ R+W K ++LKGHTD++ L D
Sbjct: 71 GHKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIELKGHTDSVDQLCWD 244
>TC16458 similar to UP|O48679 (O48679) F3I6.5 protein, partial (20%)
Length = 539
Score = 40.4 bits (93), Expect = 0.001
Identities = 22/74 (29%), Positives = 39/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 201 LHTAQTQGYIPIAAKGHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGS------KIL 254
+H + + + + HK +V ALA++E GS+L SG ++ + VW+ G +
Sbjct: 6 VHAGEKKHSLLETLEKHKSAVNALALNEDGSVLYSGACDRSILVWERDGGDGGGEMVVVG 185
Query: 255 KLKGHTDNIRALLL 268
L+GHT I L++
Sbjct: 186 ALRGHTKAILCLVV 227
>TC18334 weakly similar to UP|Q9LHN3 (Q9LHN3) Emb|CAB63739.1
(AT3g18860/MCB22_3), partial (21%)
Length = 595
Score = 40.4 bits (93), Expect = 0.001
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 226 MDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVLFIRI---IRF 282
+ +GG + SGG + +V VWD +G K LKGH + ++ D G V+ + +R
Sbjct: 323 LPQGG--VASGGMDTLVLVWDLSTGEKAHTLKGHQLQVTSIAFDD-GDVVSASVDCTLRR 493
Query: 283 YDKGQQRCVHSYAVHTDSVWALASTPT 309
+ GQ C ++ H V A+ PT
Sbjct: 494 WKNGQ--CTETWEAHKAPVQAVIKLPT 568
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/89 (26%), Positives = 36/89 (39%), Gaps = 6/89 (6%)
Frame = +2
Query: 51 GSDYLFTGSRDGRLKRWALAEDAATCSATFESHVDWVNDAVLVGDNT------LVSCSSD 104
G+D + T SRD ++ W+ S H +V V + N + S D
Sbjct: 179 GNDGIATSSRDKTVRFWSPENRKFVSSKVLVGHSSFVGPLVWIPPNPELPQGGVASGGMD 358
Query: 105 TTLKTWNALSAGTCVRTHRQHTDYVTCLA 133
T + W+ LS G T + H VT +A
Sbjct: 359 TLVLVWD-LSTGEKAHTLKGHQLQVTSIA 442
Score = 28.9 bits (63), Expect = 3.1
Identities = 21/79 (26%), Positives = 36/79 (44%), Gaps = 5/79 (6%)
Frame = +2
Query: 83 HVDWVNDAVLVGDNTLVSCSSDTTLKTWNALSAG-TCVRTHRQHTDYVTCLAAAGKNSNI 141
H D V + G++ + + S D T++ W+ + + H+ +V L N +
Sbjct: 146 HEDDVRGICVCGNDGIATSSRDKTVRFWSPENRKFVSSKVLVGHSSFVGPLVWIPPNPEL 325
Query: 142 ----VASGGLGGEVFVWDI 156
VASGG+ V VWD+
Sbjct: 326 PQGGVASGGMDTLVLVWDL 382
>TC13023 similar to UP|Q8L830 (Q8L830) WD40-repeat protein (Fragment),
partial (18%)
Length = 591
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Frame = +1
Query: 215 KGHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRV 274
+G ESV ALA+ ++L S G + +RVWD + + KGH + + +G +
Sbjct: 274 QGDSESVTALALSPDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGL 453
Query: 275 LFI----RIIRFYDKGQQRCVHSYAVH 297
L R + +D C H + H
Sbjct: 454 LATGGADRKVLVWDVDGGYCTHFFKGH 534
Score = 38.9 bits (89), Expect = 0.003
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 95 DNTLVSCSSDTTLKTWNALSAGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVW 154
DN L S ++ W+ LS CVR+ + H V C++ + ++A+GG +V VW
Sbjct: 319 DNLLFSSGHSRQIRVWD-LSTLKCVRSWKGHEGPVMCMSCH-PSGGLLATGGADRKVLVW 492
Query: 155 DIE 157
D++
Sbjct: 493 DVD 501
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/122 (23%), Positives = 57/122 (45%), Gaps = 4/122 (3%)
Frame = +1
Query: 210 IPIAAKGHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLD 269
+P + + Y ++ D GS + E + ++ D+ + S L+G ++++ AL L
Sbjct: 142 VPALQQFYTGGPYVVSSD--GSFIACACGESI-KIVDSANASIRSTLQGDSESVTALALS 312
Query: 270 STGRVLFI----RIIRFYDKGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDFSLYLT 325
+LF R IR +D +CV S+ H V ++ P+ + +GG D + +
Sbjct: 313 PDDNLLFSSGHSRQIRVWDLSTLKCVRSWKGHEGPVMCMSCHPSGGLLATGGADRKVLVW 492
Query: 326 DL 327
D+
Sbjct: 493 DV 498
>TC14937 similar to UP|Q9FN19 (Q9FN19) Genomic DNA, chromosome 5, TAC
clone:K8K14 (AT5g67320/K8K14_4), partial (19%)
Length = 1089
Score = 38.5 bits (88), Expect = 0.004
Identities = 21/76 (27%), Positives = 38/76 (49%)
Frame = +1
Query: 180 GSANLLPSTNLRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAMDEGGSILVSGGTE 239
G++N L + S ++ L + G + + GH++ VY++A G L SG +
Sbjct: 25 GTSNPNKKLVLASASFDSTVKLWDVEV-GKLIYSLNGHRDGVYSVAFSPNGEYLASGSPD 201
Query: 240 KVVRVWDTRSGSKILK 255
K + +W + G KI+K
Sbjct: 202 KSIHIWSLKEG-KIVK 246
Score = 32.7 bits (73), Expect = 0.22
Identities = 13/44 (29%), Positives = 20/44 (44%)
Frame = +1
Query: 232 ILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVL 275
+L S + V++WD G I L GH D + ++ G L
Sbjct: 52 VLASASFDSTVKLWDVEVGKLIYSLNGHRDGVYSVAFSPNGEYL 183
>TC8529 homologue to UP|Q94KS2 (Q94KS2) TGF-beta receptor-interacting
protein 1, partial (44%)
Length = 650
Score = 37.4 bits (85), Expect = 0.009
Identities = 32/121 (26%), Positives = 51/121 (41%), Gaps = 17/121 (14%)
Frame = +1
Query: 216 GHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKI-----------LKLKGHTDNI- 263
GHK+++ +L+ GS V+G +K R+WDTR+ + I + + D++
Sbjct: 28 GHKKAITSLSKSADGSHFVTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVV 207
Query: 264 -----RALLLDSTGRVLFIRIIRFYDKGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGR 318
A + +T +FYDK Q + H + ALA P SGG
Sbjct: 208 LGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGE 387
Query: 319 D 319
D
Sbjct: 388 D 390
>TC13152 similar to UP|Q84XX6 (Q84XX6) Leunig (Fragment), partial (60%)
Length = 453
Score = 37.4 bits (85), Expect = 0.009
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = +2
Query: 55 LFTGSRDGRLKRWALAEDAATCSATFESHVDWVNDAVLVGDNTLVSCSS-DTTLKTWNAL 113
L +G D + W D+ AT E H + D ++ SS D T+K W+
Sbjct: 5 LASGGHDKKAVLWYT--DSLKQKATLEEHSALITDVRFSPSMPRLATSSFDKTVKVWDVD 178
Query: 114 SAGTCVRTHRQHTDYVTCLAAAGKNSNIVASGGLGGEVFVWDI-EAALAPVSK 165
+ G +RT H+ V L +++ S GE+ W I + A VSK
Sbjct: 179 NPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDSDGEIRYWSINNGSCARVSK 337
>CB826976
Length = 285
Score = 36.2 bits (82), Expect = 0.020
Identities = 13/45 (28%), Positives = 24/45 (52%)
Frame = +2
Query: 215 KGHKESVYALAMDEGGSILVSGGTEKVVRVWDTRSGSKILKLKGH 259
+GH VYA + G ++S + +R+W T+ + ++ KGH
Sbjct: 128 QGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGH 262
>TC19491 similar to GB|AAP37692.1|30725340|BT008333 At4g29830 {Arabidopsis
thaliana;}, partial (39%)
Length = 527
Score = 36.2 bits (82), Expect = 0.020
Identities = 16/74 (21%), Positives = 36/74 (48%)
Frame = +1
Query: 190 LRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAMDEGGSILVSGGTEKVVRVWDTRS 249
L T S ++ ++ A+ + + + GH V + + G + +G +++ VR+WD
Sbjct: 64 LFTASDDGNVHMYDAEGKALVGTMS-GHASWVLCVDVSPDGGAIATGSSDRTVRLWDLAM 240
Query: 250 GSKILKLKGHTDNI 263
+ + + HTD +
Sbjct: 241 RASVQTMSNHTDQV 282
Score = 33.5 bits (75), Expect = 0.13
Identities = 20/91 (21%), Positives = 38/91 (40%), Gaps = 4/91 (4%)
Frame = +1
Query: 232 ILVSGGTEKVVRVWDTRSGSKILKLKGHTDNIRALLLDSTGRVLFI----RIIRFYDKGQ 287
+L + + V ++D + + + GH + + + G + R +R +D
Sbjct: 61 LLFTASDDGNVHMYDAEGKALVGTMSGHASWVLCVDVSPDGGAIATGSSDRTVRLWDLAM 240
Query: 288 QRCVHSYAVHTDSVWALASTPTFSHVYSGGR 318
+ V + + HTD VW +A P GGR
Sbjct: 241 RASVQTMSNHTDQVWGVAFRPPGGTDVRGGR 333
>TC19190 weakly similar to PIR|T46032|T46032 WD-40 repeat regulatory protein
tup1 homolog - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (18%)
Length = 511
Score = 35.4 bits (80), Expect = 0.033
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 230 GSILVSGGTEKVVRVWDTRSGSKILKLKGHTDNI 263
G +VSG ++ V +WD + + I KL+GHTD +
Sbjct: 15 GRYIVSGSEDRCVYLWDLQQKNMIQKLEGHTDTV 116
>BP077669
Length = 488
Score = 35.0 bits (79), Expect = 0.044
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -2
Query: 188 TNLRTISSSHSISLHTAQTQGYIPIAAKGHKESVYALAMDEGGSILVSGGTEKVVRVWDT 247
T L T SS ++ L +Q + GHK+ V+ + S LV+ ++ ++WD
Sbjct: 280 TQLATCSSDSTVRLWDLTSQCRLQKTLNGHKKWVWDCTYNSDSSYLVTASSDLTAKLWDC 101
Query: 248 RSGSKILKLK 257
G I + K
Sbjct: 100 ARGEYIKEYK 71
Score = 33.9 bits (76), Expect = 0.097
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = -2
Query: 43 LLTSTISDGSDYLFTGSRDGRLKRWALAEDAATCSATFESHVDWVNDAVLVGDNT-LVSC 101
+L I+ L T S D ++ W L T H WV D D++ LV+
Sbjct: 310 ILKCKIAPNCTQLATCSSDSTVRLWDLTSQCRL-QKTLNGHKKWVWDCTYNSDSSYLVTA 134
Query: 102 SSDTTLKTWN 111
SSD T K W+
Sbjct: 133 SSDLTAKLWD 104
>TC9007 similar to UP|Q9SSS7 (Q9SSS7) F6D8.2 protein (At1g52730), partial
(23%)
Length = 647
Score = 35.0 bits (79), Expect = 0.044
Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 180 GSANLLPSTNLRTISSSHSISLHTAQTQGYIPIAA-KGHKESVYALAMDEGGSILVSGGT 238
GSA+L P + I+ + +H IA KGH V+ + GG SG
Sbjct: 30 GSASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSE 209
Query: 239 EKVVRVWDT 247
+ +R+W T
Sbjct: 210 DGTIRIWQT 236
>AV768303
Length = 550
Score = 33.9 bits (76), Expect = 0.097
Identities = 36/174 (20%), Positives = 67/174 (37%), Gaps = 11/174 (6%)
Frame = +1
Query: 217 HKESVYALAMDEGGSILVSGGTEKVVRVWD----------TRSGSKILKLKGHTDNIRAL 266
HK+S+ A+ G + VS G +K V++W S ++ + D
Sbjct: 13 HKDSIRAIRFAANGKLFVSAGDDKTVKIWSPPQSWRCIATVLSEKRVTAVAISNDGCYVC 192
Query: 267 LLDSTGRVLFIRIIRFYDKGQQRCVHSYAVHTDSVWALASTPTFSHVYSGGRDFSLYLTD 326
D G V + + + G ++ + + + +L +P + S RDF + +T
Sbjct: 193 FADKFGVVWVVDLEQ--PLGDKKPTPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTC 366
Query: 327 LQTRESSLLCTGEHPIRQLAL-HNDSIWVASTDSSVHRWPAEGCDPQKIFQRGN 379
+ G H I+ L H + + S + PA+ C PQ + G+
Sbjct: 367 FPDKP----LNGAHEIQSFCLGHTEFV------SCLAFVPAKEC-PQSLLLSGS 495
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,550,396
Number of Sequences: 28460
Number of extensions: 194803
Number of successful extensions: 1019
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of query: 744
length of database: 4,897,600
effective HSP length: 97
effective length of query: 647
effective length of database: 2,136,980
effective search space: 1382626060
effective search space used: 1382626060
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC148345.14