BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148342.20 - phase: 0
(129 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 93 1e-20
TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension ... 92 2e-20
TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (... 91 5e-20
AV410621 91 6e-20
TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 91 6e-20
AU089356 91 6e-20
TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 91 6e-20
TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 91 8e-20
TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal prote... 91 8e-20
TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 91 8e-20
CN824966 91 8e-20
AV428412 91 8e-20
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%) 91 8e-20
TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 90 1e-19
TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 79 3e-16
AV766129 77 1e-15
AV427711 76 2e-15
TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal... 75 5e-15
AV769937 62 4e-11
TC14061 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric po... 59 2e-10
>TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (70%)
Length = 868
Score = 93.2 bits (230), Expect = 1e-20
Identities = 54/94 (57%), Positives = 64/94 (67%)
Frame = +3
Query: 35 SLNISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQ 94
SLN+ L L +++MQIFVK L GKT TL+V+SS I VK I + +GIP Q
Sbjct: 39 SLNVPL------LSTFLLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 200
Query: 95 RLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
RLIFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 201 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 302
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 255 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 434
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 435 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 530
Score = 54.7 bits (130), Expect(2) = 2e-15
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +1
Query: 94 QRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
QRLIFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 655 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 759
Score = 41.2 bits (95), Expect(2) = 2e-15
Identities = 25/54 (46%), Positives = 33/54 (60%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIP 90
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP
Sbjct: 483 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 644
Score = 37.0 bits (84), Expect = 0.001
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDG 88
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +G
Sbjct: 712 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 867
>TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension protein,
partial (97%)
Length = 644
Score = 92.4 bits (228), Expect = 2e-20
Identities = 51/84 (60%), Positives = 59/84 (69%)
Frame = +1
Query: 45 IVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLD 104
+V L +MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+
Sbjct: 4 LVRLCCCCKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 183
Query: 105 GNRTLADYNVTKESTLHLVLRLLG 128
RTLADYN+ KESTLHLVLRL G
Sbjct: 184 DGRTLADYNIQKESTLHLVLRLRG 255
>TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (fragment)
{Helianthus annuus;} , partial (93%)
Length = 1380
Score = 91.3 bits (225), Expect = 5e-20
Identities = 53/88 (60%), Positives = 62/88 (70%)
Frame = +1
Query: 41 KFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFAR 100
+F I LL+ +MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA
Sbjct: 10 QFLFISLLS-TFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 186
Query: 101 MQLDGNRTLADYNVTKESTLHLVLRLLG 128
QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 187 KQLEDGRTLADYNIQKESTLHLVLRLRG 270
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 679 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 858
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 859 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 954
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 907 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 1086
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 1087IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 1182
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 223 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 402
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 403 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 498
Score = 89.0 bits (219), Expect = 2e-19
Identities = 51/92 (55%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 451 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 630
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ R+LADYN+ KESTLHLVLRL G
Sbjct: 631 IFAGKQLEDGRSLADYNIQKESTLHLVLRLRG 726
>AV410621
Length = 292
Score = 90.9 bits (224), Expect = 6e-20
Identities = 53/85 (62%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +3
Query: 45 IVLLAIV-VQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQL 103
I LL+I +MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL
Sbjct: 15 IPLLSISPTKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 194
Query: 104 DGNRTLADYNVTKESTLHLVLRLLG 128
+ RTLADYN+ KESTLHLVLRL G
Sbjct: 195 EDGRTLADYNIQKESTLHLVLRLRG 269
>TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (67%)
Length = 842
Score = 90.9 bits (224), Expect = 6e-20
Identities = 52/92 (56%), Positives = 63/92 (67%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 256 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 435
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ +RTLADYN+ KESTLHLVLRL G
Sbjct: 436 IFAGKQLEDDRTLADYNIQKESTLHLVLRLRG 531
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 484 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 663
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 664 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 759
Score = 90.5 bits (223), Expect = 8e-20
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +1
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 76 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 255
Query: 113 NVTKESTLHLVLRLLG 128
N+ KESTLHLVLRL G
Sbjct: 256 NIQKESTLHLVLRLRG 303
Score = 31.6 bits (70), Expect = 0.045
Identities = 20/43 (46%), Positives = 26/43 (59%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKV 79
NI + ++L + MQIFVK L GKT TL+V+SS I V
Sbjct: 712 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 840
>AU089356
Length = 600
Score = 90.9 bits (224), Expect = 6e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 205 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 384
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 385 IFAGKQLEDGRTLADYNIXKESTLHLVLRLRG 480
Score = 90.5 bits (223), Expect = 8e-20
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +1
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 25 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 204
Query: 113 NVTKESTLHLVLRLLG 128
N+ KESTLHLVLRL G
Sbjct: 205 NIQKESTLHLVLRLRG 252
Score = 29.6 bits (65), Expect = 0.17
Identities = 18/37 (48%), Positives = 23/37 (61%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSS 73
NI + ++L + MQIFVK L GKT TL V+SS
Sbjct: 433 NIXKESTLHLVLRLRGGMQIFVKTLTGKTITLXVESS 543
>TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (43%)
Length = 563
Score = 90.9 bits (224), Expect = 6e-20
Identities = 49/79 (62%), Positives = 57/79 (72%)
Frame = +3
Query: 50 IVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTL 109
+ +MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTL
Sbjct: 63 VFFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 242
Query: 110 ADYNVTKESTLHLVLRLLG 128
ADYN+ KESTLHLVLRL G
Sbjct: 243 ADYNIQKESTLHLVLRLRG 299
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 252 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 431
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 432 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 527
>TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (37%)
Length = 574
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 133 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 312
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 313 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 408
Score = 70.1 bits (170), Expect = 1e-13
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = +1
Query: 69 KVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
+V+SS I VK I + +GIP QRLIFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 1 EVESSDTIDNVKAKIQDQEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 180
>TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal protein S27a
fusion protein - white lupine {Lupinus
albus;}, complete
Length = 729
Score = 90.5 bits (223), Expect = 8e-20
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +1
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 79 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 258
Query: 113 NVTKESTLHLVLRLLG 128
N+ KESTLHLVLRL G
Sbjct: 259 NIQKESTLHLVLRLRG 306
>TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 567
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 100 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 279
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 280 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 375
Score = 68.2 bits (165), Expect = 4e-13
Identities = 40/77 (51%), Positives = 49/77 (62%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 328 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 507
Query: 97 IFARMQLDGNRTLADYN 113
IFA QL+ RTLADYN
Sbjct: 508 IFAGKQLEDGRTLADYN 558
Score = 63.5 bits (153), Expect = 1e-11
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +1
Query: 80 KEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
K I + +GIP QRLIFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 1 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 147
>CN824966
Length = 600
Score = 90.5 bits (223), Expect = 8e-20
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +1
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 13 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 192
Query: 113 NVTKESTLHLVLRLLG 128
N+ KESTLHLVLRL G
Sbjct: 193 NIQKESTLHLVLRLRG 240
>AV428412
Length = 426
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +2
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 47 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 226
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 227 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 322
Score = 47.8 bits (112), Expect = 6e-07
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +2
Query: 98 FARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
FA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 2 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 94
Score = 34.3 bits (77), Expect = 0.007
Identities = 22/47 (46%), Positives = 28/47 (58%)
Frame = +2
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMI 83
NI + ++L + MQIFVK L GKT TL+V+SS I VK I
Sbjct: 275 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI 415
>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
Length = 527
Score = 90.5 bits (223), Expect = 8e-20
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 99 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 278
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 279 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 374
Score = 62.4 bits (150), Expect = 2e-11
Identities = 31/46 (67%), Positives = 35/46 (75%)
Frame = +3
Query: 83 IFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
I + +GIP QRLIFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 9 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 146
>TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 502
Score = 90.1 bits (222), Expect = 1e-19
Identities = 49/75 (65%), Positives = 55/75 (73%)
Frame = +2
Query: 54 MQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYN 113
MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADYN
Sbjct: 35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
Query: 114 VTKESTLHLVLRLLG 128
+ KESTLHLVLRL G
Sbjct: 215 IQKESTLHLVLRLRG 259
>TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (18%)
Length = 427
Score = 78.6 bits (192), Expect = 3e-16
Identities = 42/66 (63%), Positives = 48/66 (72%)
Frame = +2
Query: 63 GKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHL 122
GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADYN+ KESTLHL
Sbjct: 2 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 181
Query: 123 VLRLLG 128
VLRL G
Sbjct: 182 VLRLRG 199
>AV766129
Length = 389
Score = 76.6 bits (187), Expect = 1e-15
Identities = 43/75 (57%), Positives = 49/75 (65%)
Frame = -3
Query: 54 MQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYN 113
MQIFVK L GKT LKV+S I VK I +GIP QRLIF+ QL+ RTLAD+N
Sbjct: 363 MQIFVKPLTGKTIPLKVESFDSIDNVKAKIQAKEGIPPDQQRLIFSGKQLENGRTLADFN 184
Query: 114 VTKESTLHLVLRLLG 128
+ KES LH VL L G
Sbjct: 183 IQKESPLHFVL*LCG 139
>AV427711
Length = 251
Score = 76.3 bits (186), Expect = 2e-15
Identities = 41/67 (61%), Positives = 48/67 (71%)
Frame = +1
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 49 KMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 228
Query: 113 NVTKEST 119
N+ KEST
Sbjct: 229 NIQKEST 249
>TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal protein L3
{Arabidopsis thaliana;} , partial (83%)
Length = 1408
Score = 74.7 bits (182), Expect = 5e-15
Identities = 40/65 (61%), Positives = 47/65 (71%)
Frame = +1
Query: 64 KTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLV 123
+T TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADYN+ KESTLHLV
Sbjct: 1 QTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 180
Query: 124 LRLLG 128
LRL G
Sbjct: 181 LRLRG 195
Score = 35.0 bits (79), Expect = 0.004
Identities = 21/48 (43%), Positives = 29/48 (59%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIF 84
NI + ++L + MQIFVK L GKT TL+V+SS I VK ++
Sbjct: 148 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKATVY 291
>AV769937
Length = 296
Score = 61.6 bits (148), Expect = 4e-11
Identities = 33/53 (62%), Positives = 35/53 (65%)
Frame = -2
Query: 76 IPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
I VK I +GIP QRLIFA QL R LADYN+ KESTLHLVLRL G
Sbjct: 295 IDNVKAKIQAKEGIPPHQQRLIFAGKQLKDGRPLADYNIQKESTLHLVLRLRG 137
>TC14061 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin
{Nicotiana sylvestris;} , partial (22%)
Length = 472
Score = 59.3 bits (142), Expect = 2e-10
Identities = 30/49 (61%), Positives = 34/49 (69%)
Frame = +1
Query: 80 KEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
K I + +GIP RLIFA QL+ RT ADYN+ KESTLHLVLRL G
Sbjct: 1 KAKIQDKEGIPPDQXRLIFAGKQLEDGRTXADYNIQKESTLHLVLRLRG 147
Score = 47.0 bits (110), Expect = 1e-06
Identities = 22/32 (68%), Positives = 24/32 (74%)
Frame = +1
Query: 90 PVQDQRLIFARMQLDGNRTLADYNVTKESTLH 121
P QRLIFA QL+ RTLADYN+ KESTLH
Sbjct: 364 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 459
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.330 0.145 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,759,782
Number of Sequences: 28460
Number of extensions: 19290
Number of successful extensions: 263
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of query: 129
length of database: 4,897,600
effective HSP length: 80
effective length of query: 49
effective length of database: 2,620,800
effective search space: 128419200
effective search space used: 128419200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC148342.20