BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148342.16 - phase: 0 /pseudo
(138 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (... 114 6e-27
TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 114 6e-27
TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 114 6e-27
TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 114 6e-27
AU089356 114 8e-27
TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 107 7e-25
TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 103 1e-23
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%) 92 3e-20
AV428412 75 4e-15
CN824966 74 9e-15
TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 74 9e-15
TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension ... 74 9e-15
TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal prote... 74 9e-15
AV410621 74 9e-15
AV427711 73 2e-14
TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 66 2e-12
TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal... 65 5e-12
AV766129 64 7e-12
BG662275 55 4e-09
AV769937 55 6e-09
>TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (fragment)
{Helianthus annuus;} , partial (93%)
Length = 1380
Score = 114 bits (285), Expect = 6e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 46 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 222
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 223 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 402
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 403 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 495
Score = 114 bits (285), Expect = 6e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 730 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 906
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 907 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 1086
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 1087IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 1179
Score = 112 bits (281), Expect = 2e-26
Identities = 70/151 (46%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D ++LA+Y
Sbjct: 502 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRSLADY 678
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 679 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 858
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 859 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 951
>TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (43%)
Length = 563
Score = 114 bits (285), Expect = 6e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 75 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 251
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 252 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 431
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 432 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 524
>TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (70%)
Length = 868
Score = 114 bits (285), Expect = 6e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 78 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 254
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 255 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 434
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 435 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 527
Score = 84.3 bits (207), Expect(2) = 4e-22
Identities = 54/117 (46%), Positives = 68/117 (57%), Gaps = 16/117 (13%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 306 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 482
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQ 101
NI + ST+ + +F +TI +VK KI DKEGIP Q
Sbjct: 483 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 653
Score = 40.0 bits (92), Expect = 1e-04
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 16/71 (22%)
Frame = +1
Query: 42 QRLFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF----------------NTIL 85
QRL F GK ++D +TLA+YNI + ST+ + +F +TI
Sbjct: 655 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTID 834
Query: 86 DVKKKIHDKEG 96
+VK KI DKEG
Sbjct: 835 NVKAKIQDKEG 867
Score = 38.9 bits (89), Expect = 3e-04
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEG 36
MQIF+K + G K L V+SSDTI +VK KI DKEG
Sbjct: 763 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEG 867
Score = 34.7 bits (78), Expect(2) = 4e-22
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 102 QRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
QRL F GK ++D +TL +YNI + L LV LR
Sbjct: 655 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 756
>TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (67%)
Length = 842
Score = 114 bits (285), Expect = 6e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 307 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDDRTLADY 483
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 484 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 663
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 664 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 756
Score = 114 bits (285), Expect = 6e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 79 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 255
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 256 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 435
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 436 IFAGKQLEDDRTLADYNIQKESTLHLVLRLR 528
>AU089356
Length = 600
Score = 114 bits (284), Expect = 8e-27
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 28 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 204
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 205 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 384
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 385 IFAGKQLEDGRTLADYNIXKESTLHLVLRLR 477
>TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 567
Score = 107 bits (267), Expect = 7e-25
Identities = 66/140 (47%), Positives = 84/140 (59%), Gaps = 16/140 (11%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 151 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 327
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 328 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 507
Query: 105 FFDGKPIKDRQTLTNYNIPR 124
F GK ++D +TL +YN R
Sbjct: 508 IFAGKQLEDGRTLADYNSRR 567
Score = 93.6 bits (231), Expect = 1e-20
Identities = 56/124 (45%), Positives = 71/124 (57%), Gaps = 16/124 (12%)
Frame = +1
Query: 28 KKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF------ 81
K KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+ + +F
Sbjct: 1 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 180
Query: 82 ----------NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLV 131
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV
Sbjct: 181 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 360
Query: 132 RSLR 135
LR
Sbjct: 361 LRLR 372
>TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (37%)
Length = 574
Score = 103 bits (256), Expect = 1e-23
Identities = 62/134 (46%), Positives = 80/134 (59%), Gaps = 16/134 (11%)
Frame = +1
Query: 18 VKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRS 77
V+SSDTI +VK KI D+EGIP QQRL F GK ++D +TLA+YNI + ST+ +
Sbjct: 4 VESSDTIDNVKAKIQDQEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 183
Query: 78 RPLF----------------NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYN 121
+F +TI +VK KI DKEGIP QQRL F GK ++D +TL +YN
Sbjct: 184 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 363
Query: 122 IPRTQPLTLVRSLR 135
I + L LV LR
Sbjct: 364 IQKESTLHLVLRLR 405
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 184 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 360
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 361 NIQKESTL 384
>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
Length = 527
Score = 92.0 bits (227), Expect = 3e-20
Identities = 55/122 (45%), Positives = 70/122 (57%), Gaps = 16/122 (13%)
Frame = +3
Query: 30 KIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF-------- 81
KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+ + +F
Sbjct: 6 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 185
Query: 82 --------NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRS 133
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV
Sbjct: 186 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 365
Query: 134 LR 135
LR
Sbjct: 366 LR 371
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 150 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 326
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 327 NIQKESTL 350
>AV428412
Length = 426
Score = 75.1 bits (183), Expect = 4e-15
Identities = 49/110 (44%), Positives = 63/110 (56%), Gaps = 16/110 (14%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 98 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 274
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDK 94
NI + ST+ + +F +TI +VK KI DK
Sbjct: 275 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 424
Score = 69.7 bits (169), Expect = 2e-13
Identities = 43/106 (40%), Positives = 58/106 (54%), Gaps = 16/106 (15%)
Frame = +2
Query: 46 FDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF----------------NTILDVKK 89
F GK ++D +TLA+YNI + ST+ + +F +TI +VK
Sbjct: 2 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 181
Query: 90 KIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 182 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 319
>CN824966
Length = 600
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 16 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 192
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 193NIQKESTL 216
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +1
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 76 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 237
>TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 502
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 35 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 212 NIQKESTL 235
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +2
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 95 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 256
>TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension protein,
partial (97%)
Length = 644
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 31 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 207
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 208NIQKESTL 231
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +1
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 91 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 252
>TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal protein S27a
fusion protein - white lupine {Lupinus
albus;}, complete
Length = 729
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 82 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 258
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 259 NIQKESTL 282
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +1
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 142 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 303
>AV410621
Length = 292
Score = 73.9 bits (180), Expect = 9e-15
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 45 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 221
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 222 NIQKESTL 245
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +3
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 105 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 266
>AV427711
Length = 251
Score = 73.2 bits (178), Expect = 2e-14
Identities = 40/67 (59%), Positives = 49/67 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 52 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 228
Query: 61 NIPENST 67
NI + ST
Sbjct: 229 NIQKEST 249
Score = 52.0 bits (123), Expect = 4e-08
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPR 124
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI +
Sbjct: 112 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 240
>TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (18%)
Length = 427
Score = 65.9 bits (159), Expect = 2e-12
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = +2
Query: 12 KMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTI 68
K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+
Sbjct: 5 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 175
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +2
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 35 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 196
>TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal protein
L3 {Arabidopsis thaliana;} , partial (83%)
Length = 1408
Score = 64.7 bits (156), Expect = 5e-12
Identities = 33/53 (62%), Positives = 41/53 (77%)
Frame = +1
Query: 16 LIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTI 68
L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+
Sbjct: 13 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 171
Score = 57.4 bits (137), Expect = 9e-10
Identities = 30/54 (55%), Positives = 37/54 (67%)
Frame = +1
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 31 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 192
>AV766129
Length = 389
Score = 64.3 bits (155), Expect = 7e-12
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = -3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K PL V+S D+I +VK KI KEGIP QQRL F GK +++ +TLA++
Sbjct: 363 MQIFVKPLTG-KTIPLKVESFDSIDNVKAKIQAKEGIPPDQQRLIFSGKQLENGRTLADF 187
Query: 61 NIPENSTI 68
NI + S +
Sbjct: 186 NIQKESPL 163
Score = 51.6 bits (122), Expect = 5e-08
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = -3
Query: 81 FNTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLV 131
F++I +VK KI KEGIP QQRL F GK +++ +TL ++NI + PL V
Sbjct: 306 FDSIDNVKAKIQAKEGIPPDQQRLIFSGKQLENGRTLADFNIQKESPLHFV 154
>BG662275
Length = 333
Score = 55.1 bits (131), Expect = 4e-09
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF++ + G+ + P+ VK SD+I +K KI +KEGIP H QR+ FD + ++TL+
Sbjct: 78 MQIFLRTLSGDYI-PVEVKGSDSIDTIKAKIEEKEGIPAHMQRIIFDIHDV-PKETLSLR 251
Query: 61 NIPENSTIDT 70
I + TIDT
Sbjct: 252 TINLDDTIDT 281
Score = 35.4 bits (80), Expect = 0.004
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPI-KDRQTLTNYNIPRT 125
++I +K KI +KEGIP H QR+ FD + K+ +L N+ T
Sbjct: 138 DSIDTIKAKIEEKEGIPAHMQRIIFDIHDVPKETLSLRTINLDDT 272
>AV769937
Length = 296
Score = 54.7 bits (130), Expect = 6e-09
Identities = 28/50 (56%), Positives = 33/50 (66%)
Frame = -2
Query: 86 DVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+VK KI KEGIP HQQRL F GK +KD + L +YNI + L LV LR
Sbjct: 289 NVKAKIQAKEGIPPHQQRLIFAGKQLKDGRPLADYNIQKESTLHLVLRLR 140
Score = 54.7 bits (130), Expect = 6e-09
Identities = 26/43 (60%), Positives = 32/43 (73%)
Frame = -2
Query: 26 DVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTI 68
+VK KI KEGIP HQQRL F GK +KD + LA+YNI + ST+
Sbjct: 289 NVKAKIQAKEGIPPHQQRLIFAGKQLKDGRPLADYNIQKESTL 161
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.141 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,946,758
Number of Sequences: 28460
Number of extensions: 22613
Number of successful extensions: 205
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of query: 138
length of database: 4,897,600
effective HSP length: 81
effective length of query: 57
effective length of database: 2,592,340
effective search space: 147763380
effective search space used: 147763380
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)
Medicago: description of AC148342.16