BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148292.5 + phase: 0 /pseudo
(1454 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 37 0.029
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 34 0.19
TC16579 weakly similar to UP|AAR82740 (AAR82740) SD09672p (Fragm... 33 0.25
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 33 0.32
TC14419 similar to UP|BAD10349 (BAD10349) Type 1 membrane protei... 32 0.94
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-... 31 1.2
TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain ... 31 1.2
TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein... 31 1.6
BP085186 31 1.6
TC10909 30 2.1
TC14616 30 2.1
AV407673 30 2.7
TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, p... 30 2.7
TC14751 similar to UP|Q948T9 (Q948T9) Respiratory burst oxidase ... 30 2.7
BP041637 30 3.6
TC16130 similar to UP|Q9SSY2 (Q9SSY2) CS-IAA2, partial (19%) 29 4.7
TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate p... 29 4.7
TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Ara... 29 4.7
TC19207 similar to UP|RLX3_STAAU (P14491) RLX protein, partial (5%) 29 4.7
AV774526 29 6.1
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 36.6 bits (83), Expect = 0.029
Identities = 34/99 (34%), Positives = 43/99 (43%)
Frame = +2
Query: 1354 VSFNG*CIF*KICRLLALEFLCCTVITRVLFTSQLIQCSMKELNIWKLTATLSEKNLQQE 1413
V+F+G KI L+ C T I +L QL+ C M LNI L A L K+ +
Sbjct: 2 VNFSGLPTSFKIFVFLSSLLHCFTAIVSLLDILQLMLCFMNVLNISTLIAMLFGKSCKPS 181
Query: 1414 S*NFFPFPLKINLQIVLLSPFFLSLSILCCSSWV*LIYT 1452
S +F F + I SP L L SW IYT
Sbjct: 182 SFIYFLFQVLIKQPTF*PSPLNLDLFHT*FPSWEFSIYT 298
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 33.9 bits (76), Expect = 0.19
Identities = 28/97 (28%), Positives = 45/97 (45%), Gaps = 1/97 (1%)
Frame = -2
Query: 828 INPFP-HLRVLIGNISLPFHPFLSFLLFLISLILHQLLNMFLILSLQLLLHPLMTLLVLH 886
+ PF H L N + PF F+ F+ LI L++ +FL L + ++ L VLH
Sbjct: 584 VEPFRIHFSALYLNNNNPFFFFI-FIFILIPLLIFNNNLLFLFFFLPIFFFFILLLRVLH 408
Query: 887 PLDVLPEIKSLLLI*RIIFVLINHLHLSITCTLFLIM 923
++ LLL +IF L H + + L L++
Sbjct: 407 TRPSASGMRRLLLFILLIFFLFLHPLVQLLNQLELLL 297
>TC16579 weakly similar to UP|AAR82740 (AAR82740) SD09672p (Fragment),
partial (5%)
Length = 705
Score = 33.5 bits (75), Expect = 0.25
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = -2
Query: 506 LIAVLSLYQIKWHIVLVLF-LILVLLSLKLCLIVLEYLNLHCGISGLVICR 555
++ + L + + +VL+LF L+LVLL+ L LI L Y NL ISG CR
Sbjct: 611 ILGTIGLVLLLFTLVLLLFTLVLVLLAGILLLICLLYCNLWAWISGDCQCR 459
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 33.1 bits (74), Expect = 0.32
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 594 LLMLAVNFSYFILIFGDPLLLILFMVTNIFSP*LMITLDFCESYCLK 640
L +L+ F +F F + I F+ T FSP* ++ FC S+ L+
Sbjct: 625 LNLLSFFFFFFFFFFFSLSIFIKFISTLFFSP*FLLLFSFCHSFLLR 765
>TC14419 similar to UP|BAD10349 (BAD10349) Type 1 membrane protein-like,
partial (25%)
Length = 1585
Score = 31.6 bits (70), Expect = 0.94
Identities = 22/67 (32%), Positives = 30/67 (43%)
Frame = +2
Query: 294 PLKDPLIVLQLNLEMSVTLSMGMVTQVLVFLKTDMSTL*TCFNKQLCYPQLCLLLFLLQI 353
P LI L + L + ++ S+ +T MS L CF K + Q CL+L LL
Sbjct: 74 PSLSSLITLGVRLLVPLSSSIAPLTDSFAIDHPTMSILQCCFRKLVLLCQSCLVLHLLPP 253
Query: 354 NSPLHHP 360
L HP
Sbjct: 254 FQLLAHP 274
>TC9175 weakly similar to UP|INAD_DROME (Q24008)
Inactivation-no-after-potential D protein, partial (5%)
Length = 692
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = -1
Query: 841 ISLPFHPFLSFLLFLISLILHQLLNMFLILSLQLLLHPLMTLLVLHPLDVLPEIKSLLLI 900
+SL HPFL L H L+ L+ L LLL PL++ L ++P + + LL+
Sbjct: 236 LSLLHHPFL--------LCYHSFLHHPLLSWLPLLLSPLLSSLQVYPPLLQVSLLLYLLL 81
Query: 901 *RIIFVLINHL 911
++ VL+ L
Sbjct: 80 SSLVQVLVGEL 48
>TC15842 homologue to GB|BAB62912.1|15207792|AB055883 ERF domain protein12
{Arabidopsis thaliana;} , partial (41%)
Length = 746
Score = 31.2 bits (69), Expect = 1.2
Identities = 13/43 (30%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Frame = +1
Query: 718 ISQNYLYLFGHMLSYMLSFSSIEYLH-LFCTIFLLTIYFMTVH 759
++ NY L G + Y+ +++E+LH LF ++FL +++ ++H
Sbjct: 19 LADNYGRLRGSLHHYIPHHNTLEFLHSLFLSVFLFSVFVASIH 147
>TC12500 similar to GB|AAH45354.1|28279536|BC045354 FNBP4 protein {Danio
rerio;} , partial (5%)
Length = 678
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 849 LSFLLFLISLILHQLLNMFLI--LSLQLLLHPLMTLLVLHPLDVLPEIKSLLLI*RIIFV 906
L L L + LH LL L L L L LHPL+ LL+L + + + + L++ + +
Sbjct: 5 LPLLQCLQQIELHSLLPQHLQNHLKLYLHLHPLLQLLLLQEVQLFQKFLNQLVMFPFLVL 184
Query: 907 LINHLH 912
L +H H
Sbjct: 185 LHHHHH 202
>BP085186
Length = 388
Score = 30.8 bits (68), Expect = 1.6
Identities = 20/44 (45%), Positives = 26/44 (58%)
Frame = +1
Query: 834 LRVLIGNISLPFHPFLSFLLFLISLILHQLLNMFLILSLQLLLH 877
L +L+G P H FL +L L+ L+L LL L+L L LLLH
Sbjct: 139 LLLLLGC*HFPLHSFLPLVLLLLLLLLLLLL---LLLLLLLLLH 261
>TC10909
Length = 569
Score = 30.4 bits (67), Expect = 2.1
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 344 LCLLLFLLQINSPLHHPCLLFLISQVYKVLS 374
L L + ++Q+N+PL HP +LFL ++K L+
Sbjct: 225 LKLAI*MVQVNTPLEHPRVLFLTVHIFK*LA 133
>TC14616
Length = 1353
Score = 30.4 bits (67), Expect = 2.1
Identities = 22/48 (45%), Positives = 29/48 (59%), Gaps = 6/48 (12%)
Frame = +1
Query: 849 LSFLLFLISLILHQLLNMFLILSLQLLLHP------LMTLLVLHPLDV 890
+SF LFLI L +L +FL+L +LL P L TLL+LHP +V
Sbjct: 619 ISFHLFLIRL----MLVLFLLLRFWVLLAPFFRLL*LDTLLLLHPHEV 750
>AV407673
Length = 427
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 804 FYMIYILERSSYLDMLFFMNVFYHINPFPHLRVLIGNISLPFHPFLSFLLFLISLIL 860
+ M+ IL S+ LFF++ + + +P + N S PF S LL L+ L+L
Sbjct: 288 YLMLLILSPPSFF--LFFLSPSHSLTIYPFFPTTLSNFSKL*TPFFSTLLLLLLLLL 124
>TC10939 similar to UP|Q941N0 (Q941N0) Drought-induced protein, partial
(59%)
Length = 564
Score = 30.0 bits (66), Expect = 2.7
Identities = 34/102 (33%), Positives = 51/102 (49%), Gaps = 4/102 (3%)
Frame = -2
Query: 506 LIAVLSLYQIKWHIVLVLFLILVLLSLKLCLIVLEYLNLHCGISGLVICRIIDCPL*LIC 565
LIAV + + +LVL L+LVLL L + L+VL L + +D L L+
Sbjct: 323 LIAVAAAATVMVMAMLVLLLLLVLLILLVLLVVL-----------LTLFVTVDLILDLVH 177
Query: 566 IPLLLL----IIKLHVMFVILPDIRNCPFPIVLLMLAVNFSY 603
PLL+L +I L + FV + + F +VLL+ V S+
Sbjct: 176 NPLLVLPSMVLI*LVLSFVSITMV--LFFLVVLLLFLVPSSH 57
>TC14751 similar to UP|Q948T9 (Q948T9) Respiratory burst oxidase homolog,
partial (34%)
Length = 1160
Score = 30.0 bits (66), Expect = 2.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Frame = -2
Query: 920 FLIMFLIITSLIPTLISFCLFMLIMN------------PKPTLRQTS 954
FL++FL S P+ +SFC FML P+PT R TS
Sbjct: 505 FLLLFLTPLSTSPSSMSFCCFMLFSTSLSMLIKGVAPIPRPTRRITS 365
>BP041637
Length = 457
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 716 YYISQNYLYLFGHMLSYMLSFSSIEYLHLFCTIFLLTIY 754
++++QN+L LF M+ F + +LHLF F +TIY
Sbjct: 324 FHLNQNHLQLFP-----MVHFLLLIHLHLFSFFFSITIY 425
Score = 28.9 bits (63), Expect = 6.1
Identities = 25/66 (37%), Positives = 33/66 (49%), Gaps = 4/66 (6%)
Frame = +3
Query: 852 LLFLISLILHQLLNMFLILSLQLLLHPLMTLLVLH----PLDVLPEIKSLLLI*RIIFVL 907
L+ I LIL L +FL L+LQL+ L+ L+ H L + P + LLLI
Sbjct: 231 LISSIQLIL--TLKLFLFLTLQLIYILLLQALMFHLNQNHLQLFPMVHFLLLI------- 383
Query: 908 INHLHL 913
HLHL
Sbjct: 384 --HLHL 395
>TC16130 similar to UP|Q9SSY2 (Q9SSY2) CS-IAA2, partial (19%)
Length = 502
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 8/46 (17%)
Frame = +2
Query: 412 CLLLFPMVIPYMFIMLVMYI--------LLLICT*IMFCILLNSKS 449
CL LFP+V+ MF++L+ +I ++ C + FC++ S
Sbjct: 338 CLNLFPVVLMLMFLLLLWWICSELNQSSIIYGCVFVSFCVIKKKPS 475
>TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate protein 80,
partial (53%)
Length = 1180
Score = 29.3 bits (64), Expect = 4.7
Identities = 21/67 (31%), Positives = 37/67 (54%)
Frame = -2
Query: 865 NMFLILSLQLLLHPLMTLLVLHPLDVLPEIKSLLLI*RIIFVLINHLHLSITCTLFLIMF 924
++FL+++L L HP LLV + + LLL+ ++ + +N LH ++ L L +
Sbjct: 918 SIFLLVNLFWLPHPDRLLLVHQRPFMRHLLNLLLLLFFLLLLFVNILHFTLFI-LLLFLV 742
Query: 925 LIITSLI 931
LII L+
Sbjct: 741 LIIRDLL 721
>TC8251 similar to GB|AAO24559.1|27808558|BT003127 At5g39890 {Arabidopsis
thaliana;}, partial (41%)
Length = 909
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 677 SMNFMP-LKVFCIKGLVLKPPNKMEEWKESINTY*T*AEPYYISQNYLYLFGHMLSYMLS 735
SMN P L V C+ LVL P KME + T T + +S N L +FG S +++
Sbjct: 481 SMNSQP*LHVLCLMSLVLLIPKKME--GTVLITEITLMLLFPVSTNTLSMFG---SCLIN 645
Query: 736 FSSIE 740
FSS E
Sbjct: 646 FSSSE 660
>TC19207 similar to UP|RLX3_STAAU (P14491) RLX protein, partial (5%)
Length = 522
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/43 (32%), Positives = 26/43 (59%)
Frame = +1
Query: 392 LMIMYVFQNLISLLFTKSNLCLLLFPMVIPYMFIMLVMYILLL 434
+ ++ + +L+SL + S+L LLL PYMF++ + LL+
Sbjct: 172 ISLISILSSLLSLSLSFSSLSLLLLSQAHPYMFLLFMHS*LLI 300
>AV774526
Length = 472
Score = 28.9 bits (63), Expect = 6.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 1057 MLFCMGIFKRMCTWTSLQV 1075
+L C+G F+ +CTWT + +
Sbjct: 212 LLLCLGGFENLCTWTGMHI 156
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.352 0.158 0.526
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,920,578
Number of Sequences: 28460
Number of extensions: 524452
Number of successful extensions: 7087
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 6686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7074
length of query: 1454
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1352
effective length of database: 1,994,680
effective search space: 2696807360
effective search space used: 2696807360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC148292.5