BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148291.6 - phase: 0
(1161 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP052828 119 4e-27
CB827612 116 2e-26
BG662087 94 2e-19
AV427422 65 6e-11
AV410603 52 7e-07
BF177840 51 1e-06
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 50 2e-06
BP055130 47 2e-05
AU089582 36 0.031
TC18698 36 0.040
AI967308 32 0.76
TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precur... 30 1.7
TC11022 similar to UP|O81702 (O81702) Gr1-protein, partial (9%) 29 3.8
TC11497 similar to UP|Q8S925 (Q8S925) Autophagy 8h (Symbiosis-re... 28 6.4
AV773121 28 6.4
>BP052828
Length = 523
Score = 119 bits (297), Expect = 4e-27
Identities = 65/152 (42%), Positives = 92/152 (59%), Gaps = 3/152 (1%)
Frame = +2
Query: 129 AFTIPCSIGPIDIGRALCDLGASINLMPLSMMKKIGGGEPKPTRMTLTLADRSISYPFGV 188
A PC+IG + DLGA IN+MP S+ + G + T + + LA+RS + P GV
Sbjct: 59 ALCYPCTIGDNKYENCMLDLGAGINVMPTSIYNILHPGPLQHTGLIVQLANRSNARPKGV 238
Query: 189 LEDVLVKVNDLIFPGDFVILDM---AEDEDMPLILGRPFLATGRALIDVEMGQLMLRFHN 245
+EDVLV+VN+LIFP DF ILDM + P+ILGRPF+ T + IDV+ G + + F +
Sbjct: 239 VEDVLVQVNELIFPADFYILDMEGETKSSRAPIILGRPFMKTAKTKIDVDNGTMSMEFGD 418
Query: 246 EQVVLNIFEAMKHRAENPKCYRIDVIDEIVED 277
NI +AMKH E+ + I V+ E+V+D
Sbjct: 419 IIAKFNIDDAMKHPLEDHSVFHIGVVSELVDD 514
>CB827612
Length = 277
Score = 116 bits (290), Expect = 2e-26
Identities = 53/92 (57%), Positives = 71/92 (76%)
Frame = +1
Query: 1017 ACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHD 1076
ACHLPVE+EH+AYWA+K+ N + AG +R L+L +LEE+RL AYE++ IYK +TK HD
Sbjct: 1 ACHLPVEIEHRAYWAVKSCNXEMQQAGIERKLQLQQLEELRLGAYESSRIYKEKTKHXHD 180
Query: 1077 KNLVSRDINSGQLVLLYNSRLKLFPGKLKSKW 1108
K + ++ + GQ VLL+NSRLKL GKL+SKW
Sbjct: 181 KMISRKEFSVGQQVLLFNSRLKLMAGKLRSKW 276
>BG662087
Length = 373
Score = 93.6 bits (231), Expect = 2e-19
Identities = 42/106 (39%), Positives = 66/106 (61%)
Frame = +1
Query: 491 WRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTA 550
WRM +DY LN A KD +PLP +D++++ + +D YS Y+QI + P D++KTA
Sbjct: 22 WRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDKTA 201
Query: 551 FTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDD 596
F + Y+ +PFGL A AT+Q M +F D + +N+EV++D+
Sbjct: 202 FMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDN 339
>AV427422
Length = 417
Score = 65.1 bits (157), Expect = 6e-11
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Frame = +1
Query: 876 PSSYSFLHILVCVDYVTKWVEAIPCV-ANDAKTVVSFLQKNIFTRFGTPRVLISDGGKHF 934
P S + +LV VD ++K+ +P AK + + + G P ++SD F
Sbjct: 13 PKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRDPLF 192
Query: 935 CNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDAL 994
+N + + K + K++T YHP++ Q EV NR L+ L IA K W+ + A
Sbjct: 193 MSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVPWAE 372
Query: 995 WAYRTAFKTHLGFSP 1009
+ Y T++ G +P
Sbjct: 373 YWYNTSYHVSTGQTP 417
>AV410603
Length = 162
Score = 51.6 bits (122), Expect = 7e-07
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 503 ATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFG 556
+T KD FP+P +D++++ L G F+ LD S Y+QI V PED+ KT F G
Sbjct: 1 STVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BF177840
Length = 410
Score = 50.8 bits (120), Expect = 1e-06
Identities = 28/99 (28%), Positives = 45/99 (45%)
Frame = +2
Query: 926 LISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKD 985
++SD F ++ + K + +T HPQT Q EV N+ L +L + N K
Sbjct: 17 IVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLKM 196
Query: 986 WSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVEL 1024
W L +AY + SP+++VYG P++L
Sbjct: 197 WETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDL 313
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/123 (24%), Positives = 63/123 (50%), Gaps = 4/123 (3%)
Frame = +2
Query: 929 DGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSK 988
+ G F + ++ I+ + ++ HPQT+ Q E +N+ + + +++ + W
Sbjct: 8 ENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWID 187
Query: 989 KLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQ----LAAGK 1044
+L LW+Y T ++ + +P+ L YG LPVE+ + + W KA + ++ +A G
Sbjct: 188 ELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFS-W*TKARHEEENRMNMAVGW 364
Query: 1045 KRL 1047
++L
Sbjct: 365 EKL 373
>BP055130
Length = 567
Score = 47.0 bits (110), Expect = 2e-05
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +2
Query: 881 FLHILVCVDYVTKWVEAIPCVAN-DAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLL 939
F I+V VD ++K+ P AN + V I G PR ++SD K F +
Sbjct: 182 FTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAFW 361
Query: 940 ENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDW 986
++ K + +++ YHPQT Q E N+ L+ L + + W
Sbjct: 362 KHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLW 502
>AU089582
Length = 383
Score = 36.2 bits (82), Expect = 0.031
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 916 IFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQIL 975
I + G P +ISD G F ++ + R K++T +HPQT Q E + + L+ +L
Sbjct: 44 IVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTIQILEDML 223
Query: 976 EKTIASNR 983
+ R
Sbjct: 224 RACVXDLR 247
>TC18698
Length = 808
Score = 35.8 bits (81), Expect = 0.040
Identities = 17/39 (43%), Positives = 24/39 (60%)
Frame = -2
Query: 558 FAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDD 596
+ Y+ MP GL T+QR M IF I KN+EV+++D
Sbjct: 771 YYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVED 655
>AI967308
Length = 443
Score = 31.6 bits (70), Expect = 0.76
Identities = 36/121 (29%), Positives = 57/121 (46%), Gaps = 12/121 (9%)
Frame = +1
Query: 250 LNIFEAMKHRAENPKCYRIDVIDEIVE--DDSR----APQPTQPL--ERTIVN---SLES 298
L +F+ K E K D I++ + +DS AP+P P E T+ N +L
Sbjct: 58 LKLFQLEKVAIEFTKPATTDQIEKETQPSEDSTTPPDAPKPEIPCVDEMTLKNDEIALLK 237
Query: 299 CDLDEDL-EVKECIKQLEASKQELGPVKIEEILGEISKGPQSSRKEEEKNPELKELPSNL 357
C+L+E + E++ K+ E KQ+L +SK ++ KEE +LKEL L
Sbjct: 238 CNLEEKVTELESMSKENENLKQQLNEA--------VSKVSEAETKEEGMKLQLKELGEEL 393
Query: 358 K 358
+
Sbjct: 394 E 396
>TC14836 similar to UP|O24322 (O24322) Cysteine proteinase precursor , partial
(92%)
Length = 1416
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 1014 YGKACHLPVELEHKAYWAIK 1033
YGKA + P+ ++KAYW IK
Sbjct: 953 YGKAGYAPIRFKNKAYWIIK 1012
>TC11022 similar to UP|O81702 (O81702) Gr1-protein, partial (9%)
Length = 514
Score = 29.3 bits (64), Expect = 3.8
Identities = 13/49 (26%), Positives = 27/49 (54%), Gaps = 6/49 (12%)
Frame = +3
Query: 875 FPSSYSFLHILVCVDYVTKWVEAIPC------VANDAKTVVSFLQKNIF 917
FPSS +LHI + ++ +W + +P V + + + F+QK+++
Sbjct: 279 FPSSSCYLHIYLLLEVKERWKQKLPFSHVER*VHSSQRGMTMFIQKSVY 425
>TC11497 similar to UP|Q8S925 (Q8S925) Autophagy 8h (Symbiosis-related like
protein), partial (88%)
Length = 584
Score = 28.5 bits (62), Expect = 6.4
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 1077 KNLVSRDINSGQLVLLYNSRLKLFPGKLKSKWSGPFLVKSVLPHGA 1122
K LV RD++ G + + +SRL L PGK VK+ LP A
Sbjct: 255 KYLVPRDLSVGHFIHILSSRLSLPPGKALF-----VFVKNTLPQTA 377
>AV773121
Length = 504
Score = 28.5 bits (62), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 791 EAHSIMWHCHSSAYGGH--HSGERTTAKVLQSGFWW 824
E+H +HC+ +GGH +S + +LQS +W
Sbjct: 226 ESHLTAFHCYVGGFGGHFGYSLRYVSVGLLQSRIYW 119
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,689,038
Number of Sequences: 28460
Number of extensions: 270426
Number of successful extensions: 1235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of query: 1161
length of database: 4,897,600
effective HSP length: 100
effective length of query: 1061
effective length of database: 2,051,600
effective search space: 2176747600
effective search space used: 2176747600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148291.6