BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.9 - phase: 0
(52 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW719979 114 4e-27
TC13041 similar to UP|Q9M8S4 (Q9M8S4) Zinc finger protein 1 (zfn... 65 2e-12
TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger pr... 64 6e-12
TC19534 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, parti... 56 1e-09
AV781302 55 4e-09
AV421126 54 8e-09
TC10891 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HU... 49 2e-07
AV409227 47 8e-07
AW164137 47 1e-06
BP056895 47 1e-06
TC15820 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, parti... 46 2e-06
TC15702 weakly similar to UP|Q8LFU7 (Q8LFU7) Zinc finger protein... 40 7e-05
AV429256 35 0.004
TC12869 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-co... 29 0.17
TC14607 28 0.38
AV407717 27 1.1
AV422795 26 1.4
TC16853 similar to UP|Q93ZP3 (Q93ZP3) At1g32359/F27G20.10, parti... 25 3.2
TC18720 weakly similar to UP|SCWA_YEAST (Q04951) Probable family... 25 4.2
AV776486 24 5.5
>AW719979
Length = 346
Score = 114 bits (285), Expect = 4e-27
Identities = 48/51 (94%), Positives = 50/51 (97%)
Frame = +3
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
MWQMSLR SETM+SGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR+L
Sbjct: 141 MWQMSLRSSETMDSGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRRL 293
>TC13041 similar to UP|Q9M8S4 (Q9M8S4) Zinc finger protein 1 (zfn1), partial
(9%)
Length = 535
Score = 65.5 bits (158), Expect = 2e-12
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +2
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
MWQ+ L + + ES YP+ P E DCSYY+RTG C FG+ CRFNHP +R
Sbjct: 389 MWQLGLGGAASDES--YPQRPDEADCSYYLRTGFCGFGSRCRFNHPRDR 529
>TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger protein 2
{Arabidopsis thaliana;}, partial (8%)
Length = 553
Score = 63.9 bits (154), Expect = 6e-12
Identities = 22/34 (64%), Positives = 29/34 (84%)
Frame = +1
Query: 13 ESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
+S PYP+ PGEPDC YY+RTG+C +G+ CR+NHP
Sbjct: 451 QSTPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHP 552
>TC19534 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, partial (40%)
Length = 514
Score = 56.2 bits (134), Expect = 1e-09
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +2
Query: 17 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
+PE PG+P+C +Y++TG C+FGA CRF+HP R
Sbjct: 413 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRER 511
>AV781302
Length = 533
Score = 54.7 bits (130), Expect = 4e-09
Identities = 27/52 (51%), Positives = 33/52 (62%)
Frame = +3
Query: 1 MWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLV 52
+WQ+ L S ES YP P E DC YY+RTG C +G+ CRFNHP +R V
Sbjct: 282 VWQLGL--SGGGES--YPLRPDEADCIYYLRTGYCGYGSRCRFNHPRDRGAV 425
Score = 47.8 bits (112), Expect = 5e-07
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +3
Query: 15 GPYPEHPGEPDCSYYIRTGLCRFGATCRF 43
G YPE G+P C YY+RTG C+FG++C++
Sbjct: 447 GEYPERAGQPVCQYYMRTGSCKFGSSCKY 533
>AV421126
Length = 416
Score = 53.5 bits (127), Expect = 8e-09
Identities = 20/45 (44%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
Frame = +2
Query: 5 SLRPS-ETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPN 48
S+ PS + + PE P +P+C YY++TG C+FG +CR++HPP+
Sbjct: 74 SIGPSGSSQKEHTLPERPDQPECHYYMKTGECKFGQSCRYHHPPD 208
Score = 45.1 bits (105), Expect = 3e-06
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PG P C++Y + G+C+FG+ C+F+HP
Sbjct: 254 PLRPGAPPCTHYTQRGICKFGSACKFDHP 340
>TC10891 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HUA1, partial
(15%)
Length = 581
Score = 48.9 bits (115), Expect = 2e-07
Identities = 17/30 (56%), Positives = 22/30 (72%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHPP 47
P G C YY++TG C+FGATC+F+HPP
Sbjct: 246 PRREGAAMCPYYLKTGTCKFGATCKFDHPP 335
Score = 48.9 bits (115), Expect = 2e-07
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 QMSLRPSETMESGP-YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR 49
++S S+ +GP YP+ PG+ +C +Y++ G C+FG C+F+HP +R
Sbjct: 39 RLSNPTSQVGIAGPIYPQRPGQIECDFYMKNGECKFGERCKFHHPIDR 182
>AV409227
Length = 427
Score = 47.0 bits (110), Expect = 8e-07
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +1
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P GE +C +Y+RTG C++GA CRFNHP
Sbjct: 82 PIRLGERECPFYMRTGSCKYGANCRFNHP 168
Score = 23.9 bits (50), Expect = 7.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +1
Query: 35 CRFGATCRFNH 45
C+FG C++NH
Sbjct: 1 CKFGKACKYNH 33
>AW164137
Length = 385
Score = 46.6 bits (109), Expect = 1e-06
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 2 WQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
W S R E P+C +Y++TG C+FGA CRF+HP +R++
Sbjct: 57 WNYSCRVLCVAEGEHIS*ETWSPECQFYMKTGDCKFGAVCRFHHPRDRQI 206
Score = 45.8 bits (107), Expect = 2e-06
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 243 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 329
>BP056895
Length = 445
Score = 46.6 bits (109), Expect = 1e-06
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -2
Query: 23 EPDCSYYIRTGLCRFGATCRFNHPPNR 49
EP+C YY+RTG C+FG CR++HP R
Sbjct: 444 EPECQYYLRTGDCKFGLACRYHHPRER 364
>TC15820 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, partial (18%)
Length = 663
Score = 45.8 bits (107), Expect = 2e-06
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +2
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 71 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 157
>TC15702 weakly similar to UP|Q8LFU7 (Q8LFU7) Zinc finger protein 3, partial
(17%)
Length = 620
Score = 40.4 bits (93), Expect = 7e-05
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P P + CS+Y R G+C+FG CR++HP
Sbjct: 99 PLRPDQNVCSHYSRYGICKFGPACRYDHP 185
Score = 30.8 bits (68), Expect = 0.058
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 32 TGLCRFGATCRFNHPPNR 49
TG C+F + C+F+HP NR
Sbjct: 3 TGACKFKSNCKFHHPRNR 56
>AV429256
Length = 337
Score = 34.7 bits (78), Expect = 0.004
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +2
Query: 5 SLRPSETMESGP----YPEHPGEPDCSYYIRTGLCRF 37
SL ESG YP+ PGE DC++Y+ T C+F
Sbjct: 227 SLAKRHRYESGSNMPMYPQRPGEKDCAHYMLTRTCKF 337
>TC12869 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-containing
protein (Fragment), partial (6%)
Length = 503
Score = 29.3 bits (64), Expect = 0.17
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 21 PGEPDCSYYIRTGLCRFGATCRFNHPP 47
P + +Y RTG C A+C NH P
Sbjct: 256 PSQFSVNYSARTGCCHNNASCHINHTP 336
>TC14607
Length = 582
Score = 28.1 bits (61), Expect = 0.38
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +3
Query: 18 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 46
P G+ C +Y +G C+ GA+C + HP
Sbjct: 321 PSPKGQRVCKFY-ESGYCKKGASCGYLHP 404
>AV407717
Length = 406
Score = 26.6 bits (57), Expect = 1.1
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 1/21 (4%)
Frame = +1
Query: 26 CSYY-IRTGLCRFGATCRFNH 45
CSY+ G C G TCRF H
Sbjct: 220 CSYFRSHNGSCSHGTTCRFAH 282
>AV422795
Length = 419
Score = 26.2 bits (56), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = -2
Query: 22 GEPDCSYYIRTGLCRFGATCRFNHPPNRKL 51
GE C +++T C F F+ P RKL
Sbjct: 100 GEGGCGGFVQTVCCEFSGREVFDESPRRKL 11
>TC16853 similar to UP|Q93ZP3 (Q93ZP3) At1g32359/F27G20.10, partial (20%)
Length = 722
Score = 25.0 bits (53), Expect = 3.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 26 CSYYIRTGLCRFGATCRFNH 45
C+ + TG C FG C F H
Sbjct: 70 CNKWEMTGYCPFGNKCHFAH 129
>TC18720 weakly similar to UP|SCWA_YEAST (Q04951) Probable family 17
glucosidase SCW10 precursor (Soluble cell wall protein
10) , partial (7%)
Length = 871
Score = 24.6 bits (52), Expect = 4.2
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +1
Query: 30 IRTGLCRFGATCRFNHP 46
+R GLCR +CRF+ P
Sbjct: 820 LRRGLCRRCLSCRFSEP 870
>AV776486
Length = 409
Score = 24.3 bits (51), Expect = 5.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 9 SETMESGPYPEHPGEPDCSYYIRTGLCRFGA 39
S ++ S PYP PG+ C + + + FGA
Sbjct: 256 SPSVPSDPYPNDPGDSGCVFDVMS----FGA 336
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.140 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,459,767
Number of Sequences: 28460
Number of extensions: 20135
Number of successful extensions: 102
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of query: 52
length of database: 4,897,600
effective HSP length: 28
effective length of query: 24
effective length of database: 4,100,720
effective search space: 98417280
effective search space used: 98417280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)
Medicago: description of AC148289.9