BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.7 - phase: 0
(197 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW164137 167 1e-54
TC15820 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, parti... 191 1e-49
TC19534 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, parti... 166 2e-42
AV421126 139 3e-34
TC10891 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HU... 99 4e-22
TC15702 weakly similar to UP|Q8LFU7 (Q8LFU7) Zinc finger protein... 97 1e-21
BP056895 75 1e-14
AV781302 75 1e-14
AV409227 65 1e-11
TC13041 similar to UP|Q9M8S4 (Q9M8S4) Zinc finger protein 1 (zfn... 56 5e-09
AW719979 54 2e-08
TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger pr... 48 1e-06
AV770031 40 4e-04
TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor,... 33 0.025
AV429256 30 0.28
TC9264 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, ... 30 0.28
TC8117 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partia... 28 0.82
TC20080 similar to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catalyt... 27 1.8
AV407717 27 1.8
TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-d... 27 2.4
>AW164137
Length = 385
Score = 167 bits (423), Expect(2) = 1e-54
Identities = 70/74 (94%), Positives = 73/74 (98%)
Frame = +3
Query: 61 PECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKF 120
PECQFYMKTGDCKFGAVCRFHHPR+R IPAPDC+LSPLGLPLRPGEPLCVFYSRYGICKF
Sbjct: 123 PECQFYMKTGDCKFGAVCRFHHPRDRQIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKF 302
Query: 121 GPSCKFDHPMGIFT 134
GPSCKFDHPMG+FT
Sbjct: 303 GPSCKFDHPMGVFT 344
Score = 61.6 bits (148), Expect(2) = 1e-54
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1
Query: 22 GDPENAGLQGVYSQYRSGSVPVGFYALQRENIFPERP 58
G ENAG G YSQ+R+G++PVG+YALQRE+IFPERP
Sbjct: 7 GTRENAGSHGAYSQFRAGTIPVGYYALQRESIFPERP 117
Score = 42.0 bits (97), Expect = 7e-05
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 55 PERPDQPECQFYMKTGDCKFGAVCRFHHP 83
P RP +P C FY + G CKFG C+F HP
Sbjct: 243 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 329
>TC15820 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, partial (18%)
Length = 663
Score = 191 bits (484), Expect = 1e-49
Identities = 92/116 (79%), Positives = 101/116 (86%), Gaps = 1/116 (0%)
Frame = +2
Query: 78 CRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNV 137
CRFHHPRER IPAPDC+LSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIF YN+
Sbjct: 2 CRFHHPRERAIPAPDCILSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNI 181
Query: 138 SASPLAEAAGRRLLG-SSSGTAALSLSSEGLVESGSVKPRRLSLSETRPNPSGDDD 192
SA P A+A+GRRLLG SSSGTAAL+LSSE +PRR+S+SETR PSGDD+
Sbjct: 182 SAPPSADASGRRLLGSSSSGTAALNLSSE--------EPRRVSISETRHVPSGDDE 325
>TC19534 similar to UP|Q9SWF9 (Q9SWF9) Zinc finger protein, partial (40%)
Length = 514
Score = 166 bits (421), Expect = 2e-42
Identities = 75/86 (87%), Positives = 77/86 (89%)
Frame = +2
Query: 1 MGSDSPQQTMRNDQTYGTSHQGDPENAGLQGVYSQYRSGSVPVGFYALQRENIFPERPDQ 60
MG DSPQQTM NDQ YGTS QGDPEN G QG YSQ+RSGSVPVGFYAL+ ENIFPERP Q
Sbjct: 254 MGPDSPQQTMGNDQAYGTSRQGDPENTGSQGAYSQFRSGSVPVGFYALEGENIFPERPGQ 433
Query: 61 PECQFYMKTGDCKFGAVCRFHHPRER 86
PECQFYMKTGDCKFGAVCRFHHPRER
Sbjct: 434 PECQFYMKTGDCKFGAVCRFHHPRER 511
>AV421126
Length = 416
Score = 139 bits (351), Expect = 3e-34
Identities = 67/129 (51%), Positives = 85/129 (64%)
Frame = +2
Query: 16 YGTSHQGDPENAGLQGVYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFG 75
YG +H P +A G Y S P G + Q+E+ PERPDQPEC +YMKTG+CKFG
Sbjct: 8 YGITHLPSPTSA-YGGPYQTTVSSIGPSG--SSQKEHTLPERPDQPECHYYMKTGECKFG 178
Query: 76 AVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTY 135
CR+HHP + + LSP+GLPLRPG P C Y++ GICKFG +CKFDHP+G +Y
Sbjct: 179 QSCRYHHPPDMGASKANVNLSPVGLPLRPGAPPCTHYTQRGICKFGSACKFDHPIGSLSY 358
Query: 136 NVSASPLAE 144
+ SAS LA+
Sbjct: 359 SPSASSLAD 385
>TC10891 similar to UP|Q941Q3 (Q941Q3) Floral homeotic protein HUA1, partial
(15%)
Length = 581
Score = 99.4 bits (246), Expect = 4e-22
Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 7/84 (8%)
Frame = +3
Query: 53 IFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIP-------APDCVLSPLGLPLRPG 105
I+P+RP Q EC FYMK G+CKFG C+FHHP +R+ P L+P GLP R G
Sbjct: 81 IYPQRPGQIECDFYMKNGECKFGERCKFHHPIDRSAPLLSKQASQQTVKLTPAGLPRREG 260
Query: 106 EPLCVFYSRYGICKFGPSCKFDHP 129
+C +Y + G CKFG +CKFDHP
Sbjct: 261 AAMCPYYLKTGTCKFGATCKFDHP 332
Score = 42.7 bits (99), Expect = 4e-05
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3
Query: 101 PLRPGEPLCVFYSRYGICKFGPSCKFDHPM 130
P RPG+ C FY + G CKFG CKF HP+
Sbjct: 87 PQRPGQIECDFYMKNGECKFGERCKFHHPI 176
>TC15702 weakly similar to UP|Q8LFU7 (Q8LFU7) Zinc finger protein 3, partial
(17%)
Length = 620
Score = 97.4 bits (241), Expect = 1e-21
Identities = 49/100 (49%), Positives = 62/100 (62%), Gaps = 10/100 (10%)
Frame = +3
Query: 69 TGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDH 128
TG CKF + C+FHHPR R P C+LS GLPLRP + +C YSRYGICKFGP+C++DH
Sbjct: 3 TGACKFKSNCKFHHPRNRVARLPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDH 182
Query: 129 P----------MGIFTYNVSASPLAEAAGRRLLGSSSGTA 158
P +G+ +Y SA E AG LG S+G +
Sbjct: 183 PIDPLPVMMPGLGLQSYPNSAD--VEMAG---LGGSAGAS 287
Score = 42.0 bits (97), Expect = 7e-05
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +3
Query: 55 PERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRP 104
P RPDQ C Y + G CKFG CR+ HP + P P ++ LGL P
Sbjct: 99 PLRPDQNVCSHYSRYGICKFGPACRYDHPID---PLP-VMMPGLGLQSYP 236
>BP056895
Length = 445
Score = 74.7 bits (182), Expect = 1e-14
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 6/64 (9%)
Frame = -2
Query: 60 QPECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPL------CVFYS 113
+PECQ+Y++TGDCKFG CR+HHPRER + P +LSP+GLP RP L VFY
Sbjct: 444 EPECQYYLRTGDCKFGLACRYHHPRERFMAQP--LLSPIGLPFRPSWSLTSDGT*SVFYI 271
Query: 114 RYGI 117
+G+
Sbjct: 270 YHGL 259
Score = 38.1 bits (87), Expect = 0.001
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 106 EPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPL 142
EP C +Y R G CKFG +C++ HP F SP+
Sbjct: 444 EPECQYYLRTGDCKFGLACRYHHPRERFMAQPLLSPI 334
>AV781302
Length = 533
Score = 74.7 bits (182), Expect = 1e-14
Identities = 32/73 (43%), Positives = 47/73 (63%)
Frame = +3
Query: 54 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYS 113
+P RPD+ +C +Y++TG C +G+ CRF+HPR+R + P R G+P+C +Y
Sbjct: 318 YPLRPDEADCIYYLRTGYCGYGSRCRFNHPRDRG-AVIGAARTGGEYPERAGQPVCQYYM 494
Query: 114 RYGICKFGPSCKF 126
R G CKFG SCK+
Sbjct: 495 RTGSCKFGSSCKY 533
Score = 42.0 bits (97), Expect = 7e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 101 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 129
PLRP E C++Y R G C +G C+F+HP
Sbjct: 321 PLRPDEADCIYYLRTGYCGYGSRCRFNHP 407
>AV409227
Length = 427
Score = 64.7 bits (156), Expect = 1e-11
Identities = 28/58 (48%), Positives = 39/58 (66%)
Frame = +1
Query: 72 CKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 129
CKFG C+++H R + AP L+ +GLP+R GE C FY R G CK+G +C+F+HP
Sbjct: 1 CKFGKACKYNHTRGSSSTAPK--LNFIGLPIRLGERECPFYMRTGSCKYGANCRFNHP 168
Score = 47.8 bits (112), Expect = 1e-06
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 55 PERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAPD 92
P R + EC FYM+TG CK+GA CRF+HP ++ D
Sbjct: 82 PIRLGERECPFYMRTGSCKYGANCRFNHPDPTSVGGSD 195
Score = 26.2 bits (56), Expect = 4.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 118 CKFGPSCKFDHPMG 131
CKFG +CK++H G
Sbjct: 1 CKFGKACKYNHTRG 42
>TC13041 similar to UP|Q9M8S4 (Q9M8S4) Zinc finger protein 1 (zfn1), partial
(9%)
Length = 535
Score = 55.8 bits (133), Expect = 5e-09
Identities = 27/78 (34%), Positives = 43/78 (54%), Gaps = 5/78 (6%)
Frame = +2
Query: 14 QTYGTSHQGD-----PENAGLQGVYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMK 68
+ YG S++G PE G G + +G + +P+RPD+ +C +Y++
Sbjct: 299 EQYGRSNEGSRSDPSPEWTG-PGGETGLEEPMWQLGLGGAASDESYPQRPDEADCSYYLR 475
Query: 69 TGDCKFGAVCRFHHPRER 86
TG C FG+ CRF+HPR+R
Sbjct: 476 TGFCGFGSRCRFNHPRDR 529
Score = 39.3 bits (90), Expect = 5e-04
Identities = 15/29 (51%), Positives = 18/29 (61%)
Frame = +2
Query: 101 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 129
P RP E C +Y R G C FG C+F+HP
Sbjct: 434 PQRPDEADCSYYLRTGFCGFGSRCRFNHP 520
>AW719979
Length = 346
Score = 53.9 bits (128), Expect = 2e-08
Identities = 18/35 (51%), Positives = 27/35 (76%)
Frame = +3
Query: 54 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTI 88
+PE P +P+C +Y++TG C+FGA CRF+HP R +
Sbjct: 189 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRRL 293
Score = 45.8 bits (107), Expect = 5e-06
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +3
Query: 101 PLRPGEPLCVFYSRYGICKFGPSCKFDHP 129
P PGEP C +Y R G+C+FG +C+F+HP
Sbjct: 192 PEHPGEPDCSYYIRTGLCRFGATCRFNHP 278
>TC13558 similar to GB|AAD33770.1|4928919|AF138744 zinc finger protein 2
{Arabidopsis thaliana;}, partial (8%)
Length = 553
Score = 47.8 bits (112), Expect = 1e-06
Identities = 15/37 (40%), Positives = 28/37 (75%)
Frame = +1
Query: 47 ALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHP 83
A+ + +P+RP +P+C +Y++TG C +G+ CR++HP
Sbjct: 442 AVAQSTPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHP 552
Score = 45.8 bits (107), Expect = 5e-06
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 92 DCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHP 129
D V P RPGEP C++Y R G+C +G +C+++HP
Sbjct: 439 DAVAQSTPYPDRPGEPDCLYYLRTGMCGYGSNCRYNHP 552
>AV770031
Length = 521
Score = 39.7 bits (91), Expect = 4e-04
Identities = 26/80 (32%), Positives = 37/80 (45%)
Frame = -1
Query: 3 SDSPQQTMRNDQTYGTSHQGDPENAGLQGVYSQYRSGSVPVGFYALQRENIFPERPDQPE 62
S SP + + Q YG +H P +A Y+ VG + ++ F ERP PE
Sbjct: 245 SSSPSN-VGSTQLYGITHL--PSSAA--AYTGPYQPSGFSVGPSSSSQKQSFSERPYPPE 81
Query: 63 CQFYMKTGDCKFGAVCRFHH 82
Q+Y K G+ K G R+ H
Sbjct: 80 IQYYSKIGESKLGPSYRYQH 21
Score = 27.3 bits (59), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 103 RPGEPLCVFYSRYGICKFGPSCKFDH 128
RP P +YS+ G K GPS ++ H
Sbjct: 98 RPYPPEIQYYSKIGESKLGPSYRYQH 21
>TC15287 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (81%)
Length = 1263
Score = 33.5 bits (75), Expect = 0.025
Identities = 21/67 (31%), Positives = 27/67 (39%), Gaps = 12/67 (17%)
Frame = +2
Query: 52 NIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPA---------PDCV---LSPLG 99
+IF D+ C FY K G C+ G C H R P PD + + P G
Sbjct: 98 SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPSISPTLLLANMYQRPDMITPGVDPQG 277
Query: 100 LPLRPGE 106
P+ P E
Sbjct: 278 QPIDPRE 298
>AV429256
Length = 337
Score = 30.0 bits (66), Expect = 0.28
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +2
Query: 53 IFPERPDQPECQFYMKTGDCKF 74
++P+RP + +C YM T CKF
Sbjct: 272 MYPQRPGEKDCAHYMLTRTCKF 337
>TC9264 similar to UP|Q9FMY5 (Q9FMY5) U2 snRNP auxiliary factor, small
subunit, partial (55%)
Length = 640
Score = 30.0 bits (66), Expect = 0.28
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Frame = +3
Query: 52 NIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPA---------PDCVLSPLGLPL 102
+IF D+ C FY K G C+ G C H + P PD L+ + P
Sbjct: 147 SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNIITQPN 326
Query: 103 RP 104
+P
Sbjct: 327 QP 332
>TC8117 similar to UP|Q9XGN6 (Q9XGN6) ESTs C99174(E10437), partial (41%)
Length = 766
Score = 28.5 bits (62), Expect = 0.82
Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 22/88 (25%)
Frame = +3
Query: 63 CQFYMKTGDCKFGAVCRFHH----------------------PRERTIPAPDCVLSPLGL 100
C + T C FG C F H PR P P P G
Sbjct: 303 CTKFFSTAGCPFGESCHFLHYVPGGYNAVAHMMNLAPSAQAPPRNVAAPPPPV---PNGS 473
Query: 101 PLRPGEPLCVFYSRYGICKFGPSCKFDH 128
+C ++ CKFG C F H
Sbjct: 474 TPAVKTRICNKFNTAEGCKFGDKCHFAH 557
>TC20080 similar to UP|Q9XGX6 (Q9XGX6) Cellulose synthase catalytic subunit,
partial (11%)
Length = 430
Score = 27.3 bits (59), Expect = 1.8
Identities = 23/61 (37%), Positives = 29/61 (46%)
Frame = -1
Query: 136 NVSASPLAEAAGRRLLGSSSGTAALSLSSEGLVESGSVKPRRLSLSETRPNPSGDDDIDD 195
++SA P +E A L+G TA LS S +P LSL T PNP D I D
Sbjct: 253 SISAVPRSEVAWPVLIG----TAFLSCFS--------FQPSTLSLHATLPNPGSTDLILD 110
Query: 196 E 196
+
Sbjct: 109 D 107
>AV407717
Length = 406
Score = 27.3 bits (59), Expect = 1.8
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +1
Query: 65 FYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSP 97
F G C G CRF H E PD P
Sbjct: 229 FRSHNGSCSHGTTCRFAHSEEELRLRPDNTWDP 327
>TC14285 similar to UP|Q9AXU5 (Q9AXU5) Pathogen-inducible alpha-dioxygenase,
partial (97%)
Length = 2266
Score = 26.9 bits (58), Expect = 2.4
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = -3
Query: 122 PSCKFDHPMGIFTYNVSASPLAEAAGRRLLGSSSGTAALSLSSEGLVESGSVKPRRLSLS 181
P C + + N+SAS L +A R+++ A+SL ++ L+ +++P S+S
Sbjct: 1802 PFCV*ASALKLLVKNLSASSLLDAMSRKIV------KAVSLIAKPLIFFSAMRPTNRSIS 1641
Query: 182 ET 183
T
Sbjct: 1640 ST 1635
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,986,011
Number of Sequences: 28460
Number of extensions: 74101
Number of successful extensions: 392
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of query: 197
length of database: 4,897,600
effective HSP length: 85
effective length of query: 112
effective length of database: 2,478,500
effective search space: 277592000
effective search space used: 277592000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148289.7