TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148289.14 - phase: 0 
         (497 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV766732                                                               30  1.2
TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain...    28  2.6
BP042068                                                               28  4.5
TC15304                                                                27  7.7

>AV766732 
          Length = 565

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 399 TTPAPALPLAPATVEECQEKLARSECVSATWKR 431
           TTP+    LAP T++EC   L R++ V  T  R
Sbjct: 331 TTPSCTTLLAPTTIQECAFLLQRNQLVKVTISR 233


>TC14476 homologue to UP|TBB3_WHEAT (Q9ZRB0) Tubulin beta-3 chain (Beta-3
            tubulin), complete
          Length = 2208

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 253  HSFQANPENLSWPKRIMSLTPSDITWYRATCNFTNIIVSCGEYSNVP 299
            HS+ +N  + S P    +   S   WY AT +F  +  S    S++P
Sbjct: 1408 HSYVSNSSSSSSPSSSSTAVAS*YCWYSATKSFMLLSASVNSISSIP 1268


>BP042068 
          Length = 558

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 4/58 (6%)
 Frame = +1

Query: 215 LLADIYHSIHDRTQVG----RGAILGCAPLLYKWFTSHLPQTHSFQANPENLSWPKRI 268
           L+  I   + DR ++G    +  +L C P L K    +L +    Q NPEN  +PKRI
Sbjct: 340 LVEAIVLDVKDRDRIGGSYLKSDLLCCNPELSKDQNCNLGEV-IIQMNPENPQFPKRI 510


>TC15304 
          Length = 477

 Score = 26.9 bits (58), Expect = 7.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -3

Query: 391 HLPRYLSSTTPAP---ALPLAPATVE 413
           H PR L ST P P   A+P+AP T +
Sbjct: 421 HQPRRLHSTAPEPKTSAVPIAPTTTK 344


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,207,289
Number of Sequences: 28460
Number of extensions: 140016
Number of successful extensions: 711
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of query: 497
length of database: 4,897,600
effective HSP length: 94
effective length of query: 403
effective length of database: 2,222,360
effective search space: 895611080
effective search space used: 895611080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)