TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148289.12 - phase: 0 
         (214 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14350 similar to UP|PSAL_SPIOL (Q41385) Photosystem I reaction...   397  e-112
TC17405 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, parti...    29  0.71
BP046293                                                               26  4.6
TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain  (Lipid-bindi...    26  4.6
TC16991 similar to GB|AAN73306.1|25141223|BT002309 At3g51670/T18...    26  6.0
TC12679                                                                25  7.8
TC19851 similar to UP|Q9SKK6 (Q9SKK6) At2g25430 protein (At2g254...    25  7.8
TC12624 weakly similar to UP|O95989 (O95989) DIPHOSPHOINOSITOL p...    25  7.8
AV774474                                                               25  7.8

>TC14350 similar to UP|PSAL_SPIOL (Q41385) Photosystem I reaction center
           subunit XI, chloroplast precursor (PSI-L) (PSI subunit
           V), partial (94%)
          Length = 1035

 Score =  397 bits (1021), Expect = e-112
 Identities = 196/215 (91%), Positives = 204/215 (94%), Gaps = 1/215 (0%)
 Frame = +2

Query: 1   MAAASPMASQLKSSFTRP-LVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQP 59
           MAAASPMASQLKS+FTRP LVTP+GL GSSPLH LPSRRQF FTVKAIQSEKP YQVIQP
Sbjct: 41  MAAASPMASQLKSTFTRPSLVTPKGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQP 220

Query: 60  INGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGP 119
           INGDPFIGSLETPVTSSPLVAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFVKAGP
Sbjct: 221 INGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGP 400

Query: 120 LRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTA 179
           LRNTEYAGSAGSLAAAGL+VILS+CLTIYG+SSFNEGDPS APSLTLTGRKK PD LQTA
Sbjct: 401 LRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQLQTA 580

Query: 180 DGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
           DGW+KFTGGFFFGGISGVTWAYFLLYVLDLPY+ K
Sbjct: 581 DGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 685


>TC17405 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, partial (10%)
          Length = 522

 Score = 28.9 bits (63), Expect = 0.71
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 30  PLHQLPSRRQFNFTVKAIQSEKPNYQVIQPINGDPFIGSLE----TPVTSSPLVAWYLSN 85
           P HQL    Q + +      +KP+   +QPI+  P + S++    TP   S L   + S 
Sbjct: 403 PSHQL----QAS*SPPQFAHQKPHQSSLQPISAQPVLNSIQAQHPTPPQHSMLTTEHAS- 239

Query: 86  LPGYRTAVNP 95
           +P  R  +NP
Sbjct: 238 VPSQRPTLNP 209


>BP046293 
          Length = 443

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 8   ASQLKSSFTRPLVTPRGLCGSS 29
           +S L+ S+TRP  +  G CGSS
Sbjct: 213 SSSLRKSYTRPTTSICGKCGSS 278


>TC8347 UP|ATPH_LOTJA (P12231) ATP synthase C chain  (Lipid-binding
           protein) (Subunit III) , complete
          Length = 1267

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 23/68 (33%), Positives = 31/68 (44%), Gaps = 10/68 (14%)
 Frame = +3

Query: 93  VNPLLRGIEV---GLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLI---VILSI--- 143
           +NP++    V   GLA G   +GP V  G        G A    A G I   ++LS+   
Sbjct: 489 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 668

Query: 144 -CLTIYGV 150
             LTIYG+
Sbjct: 669 EALTIYGL 692


>TC16991 similar to GB|AAN73306.1|25141223|BT002309 At3g51670/T18N14_50
           {Arabidopsis thaliana;}, partial (38%)
          Length = 681

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 19/52 (36%), Positives = 23/52 (43%), Gaps = 3/52 (5%)
 Frame = +3

Query: 8   ASQLKSSFTRPLVTP---RGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQV 56
           A++    F RP   P    GLC  S L   P +    FTVK    EK N Q+
Sbjct: 60  AAETLYKFVRPEEIPVRYGGLCRPSDLQNGPPKPASEFTVKG--GEKVNIQI 209


>TC12679 
          Length = 407

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 20/67 (29%), Positives = 26/67 (37%), Gaps = 6/67 (8%)
 Frame = -3

Query: 2   AAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQF------NFTVKAIQSEKPNYQ 55
           + A+P    L +S T P   PR      PL   P           NF        KPN++
Sbjct: 240 SGAAPDPDPLAASPTAPATAPRHT--PPPLRHFPCFHLLLILFI*NFDEIRFSISKPNFR 67

Query: 56  VIQPING 62
            IQP+ G
Sbjct: 66  RIQPLIG 46


>TC19851 similar to UP|Q9SKK6 (Q9SKK6) At2g25430 protein
           (At2g25430/F13B15.9), partial (30%)
          Length = 642

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 10/19 (52%), Positives = 12/19 (62%)
 Frame = +1

Query: 57  IQPINGDPFIGSLETPVTS 75
           +QP+N DPF  SL  P  S
Sbjct: 535 VQPVNQDPFAASLTIPPPS 591


>TC12624 weakly similar to UP|O95989 (O95989) DIPHOSPHOINOSITOL
           polyphosphate phosphohydrolase (NUDIX (Nucleoside
           diphosphate linked MOIETY X)-type motif 3), partial
           (17%)
          Length = 641

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (63%)
 Frame = -3

Query: 168 GRKKQPDPLQTADGWSK 184
           GRKKQP+PL     W +
Sbjct: 225 GRKKQPNPLSLLQRWKR 175


>AV774474 
          Length = 465

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = -2

Query: 161 APSLTLTGRKKQPDP 175
           +PSLTLTG    PDP
Sbjct: 266 SPSLTLTGSSSYPDP 222


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,718,075
Number of Sequences: 28460
Number of extensions: 50960
Number of successful extensions: 251
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of query: 214
length of database: 4,897,600
effective HSP length: 86
effective length of query: 128
effective length of database: 2,450,040
effective search space: 313605120
effective search space used: 313605120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)