TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148240.10 - phase: 0 /pseudo
         (1012 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP066094                                                               88  6e-18
BP084332                                                               46  3e-05
AV773101                                                               28  5.6
TC19352                                                                28  9.5

>BP066094 
          Length = 532

 Score = 88.2 bits (217), Expect = 6e-18
 Identities = 64/142 (45%), Positives = 84/142 (59%)
 Frame = +3

Query: 632 KQSGYFYPMQLTMA*YCIKWMSKVLFLMVSLKKKYMSNNLLGLRILSILTMFINLRNHYM 691
           K S Y    Q    *+ I+ M +V F MV+ ++K M  N    ++   LT+F N RN  M
Sbjct: 96  KLSDY*SHSQ*ITT*FFIR*MLRVPF*MVTSQRKSMFINPQVXKMRRTLTIFSN*RNLSM 275

Query: 692 A*NKLPELGMID*VIS*LKMILKEDKLTQHSSERHLRRTF*LCKYMLMI*YLVLLMHLFA 751
            *+KLPE GM D   S  KM     K  Q S  +  +  +*LCK+MLMI YL LL+HL+A
Sbjct: 276 V*SKLPEHGMRDSAHSFWKMSX*GVK*IQLSFAKLTKMIY*LCKFMLMILYLDLLIHLYA 455

Query: 752 KNSLS*CRMNLK*V*WEN*SSF 773
           K+ L *CR+NLK V*WEN ++F
Sbjct: 456 KSFLR*CRLNLKCV*WENSNTF 521


>BP084332 
          Length = 368

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 31/84 (36%), Positives = 42/84 (49%)
 Frame = +3

Query: 929  QAKDKQQLLCLQQKQNTFQLQVVVHNYFG*NISWKTIRLMLTVFPFFVIILLLSVCQRIQ 988
            Q +  Q L  L Q+QN  Q Q       G*NISW+ I+ +  +    VI LL     RI 
Sbjct: 21   QLRGNQPLHYLLQRQNISQQQYAALRCSG*NISWRIIKSLRAISQSIVITLLQFH*VRIL 200

Query: 989  FYIQEPSILRSNTILSETMFKKGF 1012
             YIQ  S LR +  L E M+++ +
Sbjct: 201  SYIQGQSTLR*SITLLEIMYRRAY 272


>AV773101 
          Length = 526

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 466 KSLQKLSLIQKQKLVQ*NRMKMLLRMFKITLSRLFSQNSNTNLHIL 511
           +  +KL+LI + K +  N  K  + +FK TLS++  +     +++L
Sbjct: 106 RKTKKLALINRHKCISINSTKAQILLFKFTLSKMKMKMKTIVMNVL 243


>TC19352 
          Length = 539

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 968  MLTVFPFFVIILLLSVCQRIQFYIQEPSILRSNTILSETMFKKG 1011
            ++T  P     +L+  C  ++F+I+  S L  NTIL E M KKG
Sbjct: 403  IITAIPGESWPMLVI*CHSVEFFIKPLSFLIFNTILQELM-KKG 531


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.359    0.160    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,048,130
Number of Sequences: 28460
Number of extensions: 189887
Number of successful extensions: 1910
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 1511
length of query: 1012
length of database: 4,897,600
effective HSP length: 99
effective length of query: 913
effective length of database: 2,080,060
effective search space: 1899094780
effective search space used: 1899094780
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 60 (27.7 bits)