TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148236.5 - phase: 0 /pseudo
         (478 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AI967521                                                              136  5e-44
AV427732                                                              150  4e-37
TC19928 similar to UP|O65620 (O65620) MYST1 protein (Fragment), ...    72  2e-25
BP041804                                                               49  2e-06
TC7823 similar to UP|O24470 (O24470) Lipoxygenase  , partial (96%)     28  3.3
AV766014                                                               28  4.3
TC18785 similar to UP|Q84PA3 (Q84PA3) ADP ribosylation GTPase-li...    27  7.3
TC15042 homologue to UP|Q9M3V1 (Q9M3V1) Protein phpsphatase 2C (...    27  9.6
AU251490                                                               27  9.6

>AI967521 
          Length = 436

 Score =  136 bits (342), Expect(2) = 5e-44
 Identities = 62/97 (63%), Positives = 73/97 (74%)
 Frame = +1

Query: 230 EPWKKVFGPIFIYLNSNSDGFSPIKLWEDAKQQMVNEVESWPYTFPASEDFLSSAQRGKF 289
           E WKKVFGP+FIYLNS  DG +   LW+DAK QM+ EV+SWPY+FP S+DF    +RG  
Sbjct: 145 EAWKKVFGPVFIYLNSTDDGSAVPNLWDDAKLQMLVEVQSWPYSFPDSDDFSKWDERGNV 324

Query: 290 EGRLLVRDRYIRDAFVPVSGAYVGLAAPGDVGSWQRE 326
            GRLLVRDRYI D ++   GAYVGLA PG+VGSWQ E
Sbjct: 325 SGRLLVRDRYIDDDYISAKGAYVGLAPPGEVGSWQEE 435



 Score = 58.9 bits (141), Expect(2) = 5e-44
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +2

Query: 187 SYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGADLIMKF 226
           S EFRS GPLKQ L SH+GPT L+VF S HYSG DL+ KF
Sbjct: 17  SNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKF 136


>AV427732 
          Length = 352

 Score =  150 bits (379), Expect = 4e-37
 Identities = 69/116 (59%), Positives = 84/116 (71%)
 Frame = +3

Query: 267 VESWPYTFPASEDFLSSAQRGKFEGRLLVRDRYIRDAFVPVSGAYVGLAAPGDVGSWQRE 326
           V++WPY FPASEDF  +  RG   GRLLV DRYI    +  +GAYVGLA PGD  SWQRE
Sbjct: 3   VQNWPYYFPASEDFPKADHRGNVSGRLLVLDRYIITDLISANGAYVGLAPPGDACSWQRE 182

Query: 327 YKGYQFWTITDDKGYFSIINVLPGDYNLYSWVNGFIGDYQCNNIINITSGSEINVG 382
            K YQFWT  DD G+F+I N+  GDYNL++WV GFIGDY+C++ + ITS S I +G
Sbjct: 183 CKDYQFWTRADDNGFFTISNIRAGDYNLFAWVPGFIGDYRCDDFMKITS*SYIELG 350


>TC19928 similar to UP|O65620 (O65620) MYST1 protein (Fragment), partial
           (14%)
          Length = 676

 Score = 72.0 bits (175), Expect(2) = 2e-25
 Identities = 29/46 (63%), Positives = 37/46 (80%)
 Frame = -1

Query: 328 KGYQFWTITDDKGYFSIINVLPGDYNLYSWVNGFIGDYQCNNIINI 373
           + YQFWT TD+ G F I N++PGDYNLY+W+ GFIGDY+ N+II I
Sbjct: 142 QSYQFWTRTDENGNFKIENIVPGDYNLYAWIPGFIGDYKYNDIITI 5



 Score = 60.8 bits (146), Expect(2) = 2e-25
 Identities = 36/96 (37%), Positives = 42/96 (43%), Gaps = 32/96 (33%)
 Frame = -3

Query: 265 NEVESWPYTFPASEDFLSSAQRGKFEGRLLVRDRYIR----------------------- 301
           NEV SWPY FP S+DF  S QRG+  G+L V+D YI                        
Sbjct: 530 NEVRSWPYDFPQSQDFFPSKQRGQVTGQLQVKDGYIHVNV*CTYNLWLR*Q*ITYMAS*I 351

Query: 302 ---------DAFVPVSGAYVGLAAPGDVGSWQREYK 328
                       V  S AY+GL  PG+ GSWQ E K
Sbjct: 350 LGLVLFIRGKTSVYPSNAYIGLPFPGEAGSWQTESK 243


>BP041804 
          Length = 533

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 21/23 (91%), Positives = 21/23 (91%)
 Frame = -3

Query: 445 EDLVYTVGISDYKKDWFFAQVTR 467
           EDLVYTVG SDY KDWFFAQVTR
Sbjct: 531 EDLVYTVGTSDYSKDWFFAQVTR 463


>TC7823 similar to UP|O24470 (O24470) Lipoxygenase  , partial (96%)
          Length = 2909

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 46/197 (23%), Positives = 77/197 (38%), Gaps = 8/197 (4%)
 Frame = +1

Query: 273 TFPASEDFLSSAQRGKFEGRLLVRDR--YIRDAFVPVSGAYVGLAAPGDVGSWQREYKGY 330
           TFP +E F SSA  G    +   +DR  +  DA++           PG       +Y+  
Sbjct: 481 TFPITEPFTSSATPGFTTPKTTRKDRIFFTNDAYL-----------PGSTPKALVKYREE 627

Query: 331 QFWTITDDKGYFSIINVLPGDYNLYSWVNGFIGDYQCNNIINITSGSEINVG-----ELV 385
           +   +  D      ++    DY++Y+ +    G    +N+   T G   N          
Sbjct: 628 ELENLRGDGSGERKVHERIYDYDVYNDLGNPDGG---DNLARPTLGGSANYPYPRRVRTG 798

Query: 386 YEPPRHGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDRFRQYGLWERYADLYPN- 444
            +P R  PT       ++ A + YVP       N  ++  SD F  YG+     DL P  
Sbjct: 799 RQPTRKDPTC------EKPAVQLYVPRDE----NFGHLKSSD-FLGYGIKSVSHDLIPAF 945

Query: 445 EDLVYTVGISDYKKDWF 461
           + L++ + I+  + D F
Sbjct: 946 KSLIFDLSITKSEFDSF 996


>AV766014 
          Length = 391

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 12/29 (41%), Positives = 16/29 (54%)
 Frame = -3

Query: 208 MLSVFHSTHYSGADLIMKFGENEPWKKVF 236
           +L +    +YSG D    FG NE W +VF
Sbjct: 200 LLCLMFPLNYSGTDAGDPFGMNEDWSEVF 114


>TC18785 similar to UP|Q84PA3 (Q84PA3) ADP ribosylation GTPase-like protein
           (Fragment), partial (37%)
          Length = 453

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
 Frame = +3

Query: 282 SSAQRGKFEGRLLVRDRYIRDAFVPVSGA-YVGLAAPGDVGSWQREYKGYQFWTITDDKG 340
           S+A +  F  R +  +    D   P  G  YVG  +           +   F  ++   G
Sbjct: 126 SAANKESFFARKMAENESRPDGLPPSQGGKYVGFGSSPAPAQRSSNPQNDYFDVVSQGIG 305

Query: 341 YFSIINVLPGDYNLYSWVNGFIGDYQCNNIINITSGSEINVGE 383
             S++ V  G   L S V     DY+ N  +NI S     +G+
Sbjct: 306 KLSLV-VQAGTKELTSKVKEGGYDYKVNETVNIVSQKTSEIGQ 431


>TC15042 homologue to UP|Q9M3V1 (Q9M3V1) Protein phpsphatase 2C (PP2C)  ,
           partial (8%)
          Length = 631

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 12/44 (27%), Positives = 22/44 (49%)
 Frame = -1

Query: 413 PNPLYVNRLYVNHSDRFRQYGLWERYADLYPNEDLVYTVGISDY 456
           PN    + LY NH +          + +L+PN+ ++  VG+ +Y
Sbjct: 403 PNCYNFHYLYYNHME*IINSLSSSTFPNLFPNDKILQNVGVPNY 272


>AU251490 
          Length = 399

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 260 KQQMVNEVESWPYTFPASEDFL 281
           K Q +NE E  P+ FP  +DFL
Sbjct: 287 KSQKLNEEEKQPW*FPGGKDFL 222


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.144    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,870,719
Number of Sequences: 28460
Number of extensions: 132277
Number of successful extensions: 647
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of query: 478
length of database: 4,897,600
effective HSP length: 94
effective length of query: 384
effective length of database: 2,222,360
effective search space: 853386240
effective search space used: 853386240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)