TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148236.4 - phase: 0 
         (279 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16594 similar to GB|AAG38144.1|21700765|AY004240 phosphoglycer...   246  2e-66
BP034532                                                              195  8e-51
TC11436 similar to GB|AAG38145.1|21700767|AY004241 phosphoglycer...   191  2e-49
AV422598                                                              174  1e-44
TC16525 similar to GB|AAG38145.1|21700767|AY004241 phosphoglycer...   148  9e-37
TC10341 similar to UP|O65850 (O65850) NTH23 protein, partial (23%)     27  2.9
TC13398 weakly similar to UP|Q8AWB2 (Q8AWB2) Keratin gamma3, par...    26  6.6
TC8339 homologue to UP|Q84L89 (Q84L89) L-asparaginase, complete        26  6.6
TC17302                                                                26  8.6
BP067886                                                               26  8.6

>TC16594 similar to GB|AAG38144.1|21700765|AY004240 phosphoglycerate
           mutase-like protein {Glycine max;} , partial (56%)
          Length = 578

 Score =  246 bits (629), Expect = 2e-66
 Identities = 119/151 (78%), Positives = 134/151 (87%)
 Frame = +1

Query: 11  QTCMQVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQHVKASGLSKRIEL 70
           +T   VRHAQGFHNV G+K+P+AYLSYD  DASLTPLGW QVDNLR+HVK+SGLSK IEL
Sbjct: 124 KTLHLVRHAQGFHNVAGEKDPEAYLSYDYLDASLTPLGWNQVDNLREHVKSSGLSKGIEL 303

Query: 71  VIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMNENVVNSSRHAISSLNSPPFVAVELCRE 130
           VI SPL RTMQTAVGVFGGEA TDG+D+PPLM +N  +S+R AISSLNSPPF+AVELCRE
Sbjct: 304 VITSPLTRTMQTAVGVFGGEASTDGIDSPPLMIDNAGDSARPAISSLNSPPFLAVELCRE 483

Query: 131 HLGVHPCDKRRGISEYQNMFPAIDFSLIERD 161
           HLGVHPCDKRR I+EY+N+FPAIDFSLIE D
Sbjct: 484 HLGVHPCDKRRSITEYRNIFPAIDFSLIEID 576


>BP034532 
          Length = 533

 Score =  195 bits (495), Expect = 8e-51
 Identities = 91/132 (68%), Positives = 110/132 (82%)
 Frame = -3

Query: 139 KRRGISEYQNMFPAIDFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAV 198
           +RR +SEYQ +FPA+DFSLIE DED+ W+ D+RE  EE+AARG KF+ WLWTRKEKEIA+
Sbjct: 531 RRRSVSEYQFLFPAVDFSLIESDEDVWWEADVRETKEELAARGQKFMNWLWTRKEKEIAI 352

Query: 199 VSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDESSTNFPGKIP 258
           V+HSGFL HTL+A  NDC   +K EI  HFANCELRS+VI+DRG IGS+ S+TN+PGKIP
Sbjct: 351 VTHSGFLSHTLNAITNDCPL-MKKEISKHFANCELRSMVIVDRGMIGSETSTTNYPGKIP 175

Query: 259 QGLDLPSDVADE 270
            G DLPS+VADE
Sbjct: 174 SGPDLPSEVADE 139


>TC11436 similar to GB|AAG38145.1|21700767|AY004241 phosphoglycerate
           mutase-like protein {Glycine max;} , partial (35%)
          Length = 632

 Score =  191 bits (484), Expect = 2e-49
 Identities = 92/116 (79%), Positives = 103/116 (88%)
 Frame = +3

Query: 154 DFSLIERDEDILWKPDIREKNEEVAARGLKFLEWLWTRKEKEIAVVSHSGFLFHTLSAFG 213
           DFSL+E DED LW P+ REK E VAARGLKFLEWL TRKEKEIAVV+HS FLF+TLSAFG
Sbjct: 3   DFSLVETDEDTLWAPE-REKKEAVAARGLKFLEWLSTRKEKEIAVVTHSSFLFNTLSAFG 179

Query: 214 NDCHANVKSEICTHFANCELRSVVIIDRGTIGSDESSTNFPGKIPQGLDLPSDVAD 269
           NDCH N+KSEIC HFANCELRS+VIIDRG IGS+ES+TN+PGKIP+G DLPS+ AD
Sbjct: 180 NDCHPNIKSEICKHFANCELRSMVIIDRGVIGSNESTTNYPGKIPRGPDLPSESAD 347


>AV422598 
          Length = 475

 Score =  174 bits (441), Expect = 1e-44
 Identities = 85/120 (70%), Positives = 99/120 (81%)
 Frame = +1

Query: 11  QTCMQVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDNLRQHVKASGLSKRIEL 70
           +T   VRHAQG HNVEG+KN DAYLS DLFDA LTPLGW QVDNLR+HVK  GLS+ +EL
Sbjct: 115 KTVHLVRHAQGVHNVEGEKNHDAYLSNDLFDAHLTPLGWNQVDNLRKHVKGHGLSRSVEL 294

Query: 71  VIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMNENVVNSSRHAISSLNSPPFVAVELCRE 130
           V+VSPLLRTMQTAVGVFGGE ++DG++ PPLM E+V +S   A+SSLN P F+A ELCRE
Sbjct: 295 VVVSPLLRTMQTAVGVFGGEIYSDGINEPPLMIESVGSSDHPAVSSLNCPLFIAKELCRE 474


>TC16525 similar to GB|AAG38145.1|21700767|AY004241 phosphoglycerate
           mutase-like protein {Glycine max;} , partial (30%)
          Length = 502

 Score =  148 bits (374), Expect = 9e-37
 Identities = 67/85 (78%), Positives = 77/85 (89%)
 Frame = +3

Query: 194 KEIAVVSHSGFLFHTLSAFGNDCHANVKSEICTHFANCELRSVVIIDRGTIGSDESSTNF 253
           KEIAVVSH+GFLFH LSAFGNDCH  VK+EICTHFANCELRS+VI+DRG IGSD+ S+N+
Sbjct: 3   KEIAVVSHTGFLFHALSAFGNDCHPTVKNEICTHFANCELRSMVIVDRGLIGSDDPSSNY 182

Query: 254 PGKIPQGLDLPSDVADEKLSGSGPS 278
           PGKIP GLDLPSD+ADEKL  +GP+
Sbjct: 183 PGKIPHGLDLPSDIADEKLVANGPA 257


>TC10341 similar to UP|O65850 (O65850) NTH23 protein, partial (23%)
          Length = 801

 Score = 27.3 bits (59), Expect = 2.9
 Identities = 17/59 (28%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
 Frame = +3

Query: 171 REKNEEVAARGLKFLEWLWTRKEKEIAVVSHSGFLFHTLSAFGNDCHAN---VKSEICT 226
           REKN  +  +  KF++WL T              ++HT S F N    +   +K E C+
Sbjct: 174 REKNRRIVNQISKFIKWLITT-------------IYHTRSVFSNSRTTSR*VIKEETCS 311


>TC13398 weakly similar to UP|Q8AWB2 (Q8AWB2) Keratin gamma3, partial (4%)
          Length = 526

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 170 IREKNEEVAARGLKFLEWLWTRKEKEIAVVSHSGFLFHT 208
           + E+ EEVA +    L+WL   K+  +A ++ +    HT
Sbjct: 339 LAERKEEVARKEQDLLDWLQELKDAAVASIAEAHANNHT 455


>TC8339 homologue to UP|Q84L89 (Q84L89) L-asparaginase, complete
          Length = 1467

 Score = 26.2 bits (56), Expect = 6.6
 Identities = 25/101 (24%), Positives = 42/101 (40%), Gaps = 4/101 (3%)
 Frame = +3

Query: 7   CGLIQTCMQVRHAQGFHNVEGDKNPDAYLSYDLFDASLTPLGWKQVDN----LRQHVKAS 62
           CG +     V++      +  DK+P +YL++D  +      G + VDN       +V   
Sbjct: 351 CGAVSGVTTVKNPISLARLVMDKSPHSYLAFDGAEDFARKQGVELVDNEYFITPDNVGML 530

Query: 63  GLSKRIELVIVSPLLRTMQTAVGVFGGEAHTDGVDAPPLMN 103
            L+K  + ++     R   TA    G      GV++P  MN
Sbjct: 531 KLAKEAKAILFD--YRVPTTAYETCGA-----GVESPLYMN 632


>TC17302 
          Length = 820

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 221 KSEICT-HFANCELRSVVIIDRGTIGSDESSTNFPGKIPQGLDLPSDVADEKLSGS 275
           K  IC+ HFA C +  +   D   +     S  FP   P    LP++ ADE   G+
Sbjct: 186 KGRICSIHFATC*ISYLW*DDEPLLSL---SAPFPAASPSPCTLPANEADEDTKGT 28


>BP067886 
          Length = 171

 Score = 25.8 bits (55), Expect = 8.6
 Identities = 14/38 (36%), Positives = 21/38 (54%)
 Frame = +2

Query: 2  LCFSYCGLIQTCMQVRHAQGFHNVEGDKNPDAYLSYDL 39
          LC S+C L  TC+Q++   G ++ +      AYL  DL
Sbjct: 59 LCLSFCFLDGTCVQLK-VMGTNHGQAGCYSRAYLKEDL 169


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,501,146
Number of Sequences: 28460
Number of extensions: 78534
Number of successful extensions: 331
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of query: 279
length of database: 4,897,600
effective HSP length: 89
effective length of query: 190
effective length of database: 2,364,660
effective search space: 449285400
effective search space used: 449285400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)