TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148236.3 + phase: 0 /pseudo
         (116 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV769817                                                              196  8e-52
TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial ...   145  1e-36
TC16568 similar to UP|AAR82759 (AAR82759) RE40656p (Fragment), p...    25  2.5
TC14044 similar to UP|Q9LN13 (Q9LN13) T6D22.2, partial (10%)           24  5.7
TC15248 weakly similar to UP|Q8GT21 (Q8GT21) Benzoyl coenzyme A:...    24  5.7
AV406750                                                               23  9.6
BI417283                                                               23  9.6

>AV769817 
          Length = 436

 Score =  196 bits (498), Expect = 8e-52
 Identities = 84/108 (77%), Positives = 101/108 (92%)
 Frame = +2

Query: 1   MPWWALIFASGLALIFTLPVAIITATTNQTPGLNVITEYIMGVILPGRPIANVCFKTYGY 60
           MPWW L+FA  LA +FTLP++IITATTNQTPGLN+ITEY+ G+I PGRPIANVCFKTYGY
Sbjct: 95  MPWWGLLFAGALAFVFTLPISIITATTNQTPGLNIITEYVFGLIYPGRPIANVCFKTYGY 274

Query: 61  MSMSQAISFLSDFKLGHYMKIPPRSMFIVQILGTLIAGTVDVGVAWWL 108
           +SM+QA+SFLSDFKLGHYMKIPPRSMF+VQ +GT++AGT+++GVAWWL
Sbjct: 275 ISMAQAVSFLSDFKLGHYMKIPPRSMFLVQFIGTVLAGTINIGVAWWL 418


>TC9160 similar to UP|Q8H0V0 (Q8H0V0) Isp4 like protein, partial (53%)
          Length = 1554

 Score =  145 bits (367), Expect = 1e-36
 Identities = 61/108 (56%), Positives = 84/108 (77%)
 Frame = +2

Query: 1   MPWWALIFASGLALIFTLPVAIITATTNQTPGLNVITEYIMGVILPGRPIANVCFKTYGY 60
           +PWW ++FA  LA I TLP+ +I ATTNQ PG ++I ++++G +LPG+PIAN+ FK YG 
Sbjct: 320 LPWWGMLFAFALAFIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGR 499

Query: 61  MSMSQAISFLSDFKLGHYMKIPPRSMFIVQILGTLIAGTVDVGVAWWL 108
           +S   A+SFLSD KLGHYMKIPPR M+  Q++GTL+A  V++ VAWW+
Sbjct: 500 ISTVHALSFLSDLKLGHYMKIPPRCMYTAQLVGTLVASIVNLAVAWWM 643


>TC16568 similar to UP|AAR82759 (AAR82759) RE40656p (Fragment), partial
           (13%)
          Length = 421

 Score = 25.4 bits (54), Expect = 2.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 7   IFASGLALIFTLPVAIITATTNQTPGLNVITEYIMGVILP 46
           +  +GLA +F L  A+++     +PGL V       ++LP
Sbjct: 265 LVGTGLARVFLLTAALLSELETISPGLAVPEASTTSLVLP 146


>TC14044 similar to UP|Q9LN13 (Q9LN13) T6D22.2, partial (10%)
          Length = 550

 Score = 24.3 bits (51), Expect = 5.7
 Identities = 9/26 (34%), Positives = 17/26 (64%)
 Frame = +2

Query: 60  YMSMSQAISFLSDFKLGHYMKIPPRS 85
           Y+++S +++ L    +GH +K PP S
Sbjct: 329 YLALSTSVACLVFLFIGHLLKSPPSS 406


>TC15248 weakly similar to UP|Q8GT21 (Q8GT21) Benzoyl coenzyme A: benzyl
           alcohol benzoyl transferase, partial (52%)
          Length = 1085

 Score = 24.3 bits (51), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 91  ILGTLIAGTVDVGVAWWLPRFNK 113
           ++G L   TV V  AWW+PR  +
Sbjct: 234 VVG*LFVFTVVVCDAWWVPRMEE 166


>AV406750 
          Length = 426

 Score = 23.5 bits (49), Expect = 9.6
 Identities = 8/29 (27%), Positives = 18/29 (61%)
 Frame = -2

Query: 81  IPPRSMFIVQILGTLIAGTVDVGVAWWLP 109
           +PP +  I++ + T + GT+++ +   LP
Sbjct: 338 VPPHASLILEGIRTALKGTIEMAMNLMLP 252


>BI417283 
          Length = 557

 Score = 23.5 bits (49), Expect = 9.6
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
 Frame = -2

Query: 19  PVAIITATTNQTPGLNVITEYIMGVILPGR-----PIANV-CFKTYGYMSMSQA-ISFLS 71
           P+ ++  +T   P   +  ++I  + LP +        N+ CF T GY+ ++QA I F+ 
Sbjct: 505 PLPLL*QSTGNVPNPVMWKQFIHSLCLPSKVRRSKQCTNLKCFSTSGYIVIAQASIVFMK 326

Query: 72  DFKLGHYMKIPPRSMFIVQILGTLIAGTVDVGVAW 106
                      P         GT++  T+++   W
Sbjct: 325 HSSSPC*QTTVPSCAIQALPQGTILRFTLEMRPVW 221


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.142    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,894,770
Number of Sequences: 28460
Number of extensions: 19067
Number of successful extensions: 121
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of query: 116
length of database: 4,897,600
effective HSP length: 78
effective length of query: 38
effective length of database: 2,677,720
effective search space: 101753360
effective search space used: 101753360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)