TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148154.9 + phase: 0 /pseudo
         (481 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9632 similar to PIR|T47546|T47546 protein kinase-like - Arabid...    28  4.3
TC9265 similar to UP|BAD05829 (BAD05829) Zinc finger (C3HC4-type...    27  5.6
TC16818 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, parti...    27  7.4
TC17970                                                                27  9.6

>TC9632 similar to PIR|T47546|T47546 protein kinase-like - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (12%)
          Length = 650

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 324 CYPMLCMVTVLQCAVQPGQPLFLLYMVWKQFFLWK*RSRL 363
           C  ++  +T+L C ++ G P+F  + V +   +W+  SR+
Sbjct: 523 CCKLVLTLTLLCCHIRLGSPVFFFFFVNEVQVIWQLDSRI 642


>TC9265 similar to UP|BAD05829 (BAD05829) Zinc finger (C3HC4-type RING
           finger) protein-like, partial (43%)
          Length = 661

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 325 YPMLCMVTVLQCAVQPGQPLFLLYMVWKQFFLWK*RS 361
           Y +LC+ T+ +   +     +L++++ + FFL+K*+S
Sbjct: 479 YHLLCLTTLFELGNRLHHVFYLIWILTRFFFLFK*KS 589


>TC16818 similar to UP|Q9ASP7 (Q9ASP7) AT3g46780/T6H20_190, partial (23%)
          Length = 439

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 46  FACVCYWGCDRSGW 59
           F CVC WG DR+GW
Sbjct: 346 FDCVCCWG-DRAGW 384


>TC17970 
          Length = 542

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 237 PM*PSKW*LSSSKTTSSV-DMVFPARLLPTMVP 268
           PM PS W LSS  T+S+V ++  P+   PT  P
Sbjct: 204 PMGPSPWKLSSPSTSSAVPELTSPSLPPPTASP 302


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.364    0.161    0.620 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,762,953
Number of Sequences: 28460
Number of extensions: 128978
Number of successful extensions: 1689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 997
length of query: 481
length of database: 4,897,600
effective HSP length: 94
effective length of query: 387
effective length of database: 2,222,360
effective search space: 860053320
effective search space used: 860053320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 57 (26.6 bits)