BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148098.6 - phase: 0
(556 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB829575 91 6e-19
TC11551 homologue to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiol... 49 2e-06
TC14232 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase... 44 5e-05
BI418474 28 5.1
TC10140 similar to UP|Q8YPJ4 (Q8YPJ4) 50S ribosomal protein L18,... 27 6.6
TC8695 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (18%) 27 6.6
TC8768 homologue to UP|Q9SMJ5 (Q9SMJ5) DTDP-glucose 4-6-dehydrat... 27 6.6
BP063765 27 6.6
TC17759 similar to UP|Q944Q8 (Q944Q8) AT5g46340/MPL12_14, partia... 27 6.6
TC8924 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element... 23 8.7
AV420698 27 8.7
BP033775 27 8.7
>CB829575
Length = 521
Score = 90.5 bits (223), Expect = 6e-19
Identities = 50/100 (50%), Positives = 64/100 (64%)
Frame = +3
Query: 1 MVSLSHKQTLIDDCVSLSYEIAVGTAFYCHCLKVLVGTALLDLKGALTHQLVTQIWKVQL 60
+VS+SHKQ LIDDC+S SYEIA+G Y HCL V TAL L+ L HQL T+ K +L
Sbjct: 93 VVSISHKQKLIDDCLSKSYEIALGNGAYGHCLAVHADTALSQLRSELGHQLATKSQKPKL 272
Query: 61 RCIGSIPYKVSKLANDQQLNMSSKPWVFTSDTMETTLNIG 100
R IG++ YKV +L NDQ+L +S + V DT + G
Sbjct: 273 RGIGAVVYKVPELENDQKLKISLRS-VDNEDTTPISQEFG 389
>TC11551 homologue to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolase ,
partial (37%)
Length = 915
Score = 48.9 bits (115), Expect = 2e-06
Identities = 23/41 (56%), Positives = 32/41 (77%)
Frame = +1
Query: 134 AANMCLMQRRMTIDRGSPILEMFKSFAIVGVAHAVMGVGPS 174
AA + LM+RR+ + +G PIL +F+SFA VGV +VMGVGP+
Sbjct: 67 AAAVLLMKRRVAVQKGLPILGIFRSFAAVGVDPSVMGVGPA 189
>TC14232 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase , partial
(96%)
Length = 1703
Score = 44.3 bits (103), Expect = 5e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = +3
Query: 139 LMQRRMTIDRGSPILEMFKSFAIVGVAHAVMGVGPSKSL 177
LM+R + + +G PIL +F++FA VGV AVMGVGP+ ++
Sbjct: 981 LMKRSVAMQKGLPILGVFRTFAAVGVDPAVMGVGPAAAI 1097
>BI418474
Length = 479
Score = 27.7 bits (60), Expect = 5.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 500 WDHLGVIFSMIESNDSWLGLLHLYMLQ 526
W+H IF IESN SWL L+ L L+
Sbjct: 383 WNHSTAIFD-IESNHSWLVLIELTSLR 306
>TC10140 similar to UP|Q8YPJ4 (Q8YPJ4) 50S ribosomal protein L18, partial
(71%)
Length = 629
Score = 27.3 bits (59), Expect = 6.6
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 269 WYKNKHNR-KGLVSIVHSSYLIFYCYTRVIDKVYENWKYWMSWMTVCNLEDKLGLHGIDN 327
W N + + KG + ++ IF T I K + W+S CNL D G N
Sbjct: 573 WITNLNMKYKGKILLILEIQTIF---TSCISKCLNTARVWVSTSVECNLSDSFLQTGFCN 403
Query: 328 DTIYVV 333
D +++
Sbjct: 402 DLTHLL 385
>TC8695 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (18%)
Length = 659
Score = 27.3 bits (59), Expect = 6.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 403 FQIIVPLEVDSLNSQIFLTLYHGYCISGGNSFEFPFMFTH 442
F + PL+ + S L+ ++ + +S G+ FPFM++H
Sbjct: 299 FVTVKPLKESTSKSSFSLSSHNIFLLSEGS*RSFPFMYSH 180
>TC8768 homologue to UP|Q9SMJ5 (Q9SMJ5) DTDP-glucose 4-6-dehydratase ,
partial (43%)
Length = 562
Score = 27.3 bits (59), Expect = 6.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 285 SSYLIFYCYTRVIDKVYENWKYWMSWM 311
+S+ I + +V+ YEN YW SW+
Sbjct: 163 TSFAISLAFLQVLSGQYENSGYWRSWI 243
>BP063765
Length = 504
Score = 27.3 bits (59), Expect = 6.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -3
Query: 3 SLSHKQTLIDDCVSLSYEIAVGTAFYCHCLKVLVGTALLDLKGALTHQLVTQIWKVQLR 61
S+ HK+ LI C S+ + V +C ++ T LL GAL + T W +R
Sbjct: 193 SVLHKRELI*QCHFDSFALLVVLFLFCFFFWLIE*TCLLLCFGALLNYSTTV*WHCNIR 17
>TC17759 similar to UP|Q944Q8 (Q944Q8) AT5g46340/MPL12_14, partial (37%)
Length = 703
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/36 (41%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Frame = +2
Query: 163 GVAHAVMGVGPSKSLESFY--EILDRLPILFNCVSA 196
G +HA GV P+ S SFY +I L + NC+S+
Sbjct: 119 GASHAGAGVFPAGSYSSFYYMDIFRVLRVQKNCISS 226
>TC8924 similar to UP|Q9SXS8 (Q9SXS8) Ethylene responsive element binding
factor, partial (28%)
Length = 778
Score = 23.5 bits (49), Expect(2) = 8.7
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Frame = +2
Query: 253 LYVKLSLIAYFAFEVAWYKNKHNR----KGLV--------------SIVHSSYLIFYCYT 294
L SLI F F WY K R K +V ++ SS++ + Y
Sbjct: 446 LISNFSLILLFIFLYLWYAEKMKRMIRCKIMVI*S*FCESMFL**TMLISSSFIFNFIYE 625
Query: 295 RVIDKVYENWKYWM 308
R++ K E W+
Sbjct: 626 RILKKRREVTMIWV 667
Score = 21.6 bits (44), Expect(2) = 8.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +3
Query: 217 ATNDLVPGHLVYNDTMTLIMKVELKELCELIDT 249
AT ++P HL MT C LI T
Sbjct: 252 ATATVIPPHLSLTTVMTTSYPHRFARRCRLIST 350
>AV420698
Length = 250
Score = 26.9 bits (58), Expect = 8.7
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +3
Query: 302 ENWKYWMSWMTVCNLEDKLGLHGIDNDT 329
++W + SWM C+++D+ +D D+
Sbjct: 159 QSWTHRKSWMRTCSMDDETSFRILDIDS 242
>BP033775
Length = 530
Score = 26.9 bits (58), Expect = 8.7
Identities = 15/52 (28%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Frame = -1
Query: 177 LESFYEILDR--LPILFNCVSAPCCLALNFMANEIIIFLSNVATNDLVPGHL 226
LES Y DR + I+ + PCC N A +++ ++ L+ GH+
Sbjct: 266 LESVYLFGDRKCMAIVI*LICVPCCTGSNLAAPMLLLVKDLACSHILLVGHI 111
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,384,022
Number of Sequences: 28460
Number of extensions: 173289
Number of successful extensions: 1287
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of query: 556
length of database: 4,897,600
effective HSP length: 95
effective length of query: 461
effective length of database: 2,193,900
effective search space: 1011387900
effective search space used: 1011387900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC148098.6