BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147964.8 + phase: 0
(992 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19889 weakly similar to UP|Q8W338 (Q8W338) TGF beta receptor a... 251 4e-67
BP053601 64 9e-11
BP065386 37 0.012
TC15447 32 0.65
TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-ac... 31 1.1
TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%) 29 3.2
TC15717 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein... 29 3.2
TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog,... 29 4.2
BP067005 29 4.2
TC15183 similar to PIR|T49142|T49142 CCR4-associated factor 1-li... 28 5.5
TC14281 similar to UP|Q9XHC6 (Q9XHC6) Cytochrome P450 monooxygen... 28 5.5
CB828185 28 7.1
AV779295 28 9.3
TC15669 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulat... 28 9.3
>TC19889 weakly similar to UP|Q8W338 (Q8W338) TGF beta receptor associated
protein-like protein, partial (11%)
Length = 577
Score = 251 bits (641), Expect = 4e-67
Identities = 123/179 (68%), Positives = 147/179 (81%)
Frame = +1
Query: 1 MVHTAYDSFELLTNSTSKIESIESYGSKLLLGCSNGSLLVYAPEHSVPAPEEMRKEAYVL 60
MVH+AYDS EL+ N KIES+ +Y SKLL+GCS+GSL +Y+PE P + K YVL
Sbjct: 49 MVHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIYSPEPDSP---DRVKPPYVL 219
Query: 61 ERNVNGFAKKAVVSLQVVESREFLLSLSESIAFHKLPTFETIAVITKAKGANAFCWDEHR 120
E+N+ GFAKK +VSL+V+ESRE LLSLSESIAFH+LP+ ETIAVITKAKGAN FCWD R
Sbjct: 220 EKNLTGFAKKPIVSLEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDHRR 399
Query: 121 GFLCFARQKRVCIFRRDGGRGFVEVKDFGVLDVVKSMSWCGENICLGIRKAYVILNATS 179
GFLCFARQKRV I+R DGGRG VEVK+ GV D+VKSM WCGENIC+GIR+ Y+ILNA++
Sbjct: 400 GFLCFARQKRVSIYRHDGGRGLVEVKELGVPDMVKSMCWCGENICVGIRREYLILNASN 576
>BP053601
Length = 492
Score = 64.3 bits (155), Expect = 9e-11
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = -1
Query: 951 KKIGTSVFAVYPNGKTLVHFVCFRDSQSMKAVAKVSP 987
KK+GTSVFAVYP+G TLVHFVCFRDS +MKAV++ SP
Sbjct: 492 KKLGTSVFAVYPHGSTLVHFVCFRDSXNMKAVSQGSP 382
>BP065386
Length = 318
Score = 37.4 bits (85), Expect = 0.012
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = -2
Query: 972 CFRDSQSMKAVAKVSPLKK 990
CFRDSQSMKAVAK SPL+K
Sbjct: 317 CFRDSQSMKAVAKGSPLRK 261
>TC15447
Length = 665
Score = 31.6 bits (70), Expect = 0.65
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Frame = +3
Query: 773 IYLMLLQIYLNPRRTTKNYEKKISNLLSPRNKSIRKVTSKSLSRTMSRGSKKIAAIEIAE 832
++++LL+ + Y+K++SN++ + + S +LS M + + ++ +
Sbjct: 81 LFILLLRHHAPDEAARARYQKRVSNII---DDVLEWSPSLALSGMMDK-QQNVSNATGSS 248
Query: 833 DAKASQSSDSGRSDA----DTEEFTEEECTSIMLDEALD 867
DA ASQ+S +G DA +E FTE+ T ++D D
Sbjct: 249 DA-ASQASQTGPEDAAPADGSETFTEQYDTEEVMDNIED 362
>TC10836 similar to GB|AAL60196.1|18139887|AF441079 O-linked N-acetyl
glucosamine transferase {Arabidopsis thaliana;} ,
partial (16%)
Length = 833
Score = 30.8 bits (68), Expect = 1.1
Identities = 13/45 (28%), Positives = 28/45 (61%)
Frame = +2
Query: 311 EEALSLCKLLPPEDSNLRAAKEDSIHIRYAHYLFDNGSYEESMEH 355
E +L+L L + S + ++ +H+ AH ++ +GSY++++EH
Sbjct: 311 EPSLTLLPLRSHDSSEV----DEDLHLSLAHQMYKSGSYKKALEH 433
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/90 (27%), Positives = 41/90 (44%)
Frame = +2
Query: 313 ALSLCKLLPPEDSNLRAAKEDSIHIRYAHYLFDNGSYEESMEHFLASQVDITYVLSLYTS 372
A L + P + + + + D +Y H+L GS + S F A +V+ V +
Sbjct: 143 ASELVPIFPLSPATMISVQGDHHRHQYHHHLQIPGSSDTSRLQFTADRVEPFSVKQEPSL 322
Query: 373 IILPKTTIVHDSDKLDIFGDPLHLSRGSSM 402
+LP + HDS ++D + LHLS M
Sbjct: 323 TLLPLRS--HDSSEVD---EDLHLSLAHQM 397
>TC14589 similar to UP|Q9SI72 (Q9SI72) F23N19.14, partial (38%)
Length = 826
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 7 DSFELLTNSTSKIESIESYGSKLLLGCSNGSLLVYAPEHSVPAPEEMRKEAYVLERNVNG 66
++ L+ SKIE+ ++ L+ CSN L H+ P+P + A VL +++ G
Sbjct: 605 NALALVNRFASKIETP*AWSLGLVQLCSNSFLAFPLC*HATPSPLPQKWHACVLNKSLFG 784
Query: 67 F 67
F
Sbjct: 785 F 787
>TC15717 weakly similar to UP|Q8GT65 (Q8GT65) Serpin-like protein
(Fragment), partial (26%)
Length = 925
Score = 29.3 bits (64), Expect = 3.2
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
Frame = +2
Query: 680 SEQKWDEKVYSPKRKK-LLSALESI-----------SGYNPEALLKLLPSDALYEERAIL 727
SEQ+W K SP+ KK LLSA +++ S ++P + LLPS L A L
Sbjct: 8 SEQQWSSKNQSPRAKKTLLSASQTVYSQQKHIITRTSSFHPCLSMLLLPSWPLVHMAAHL 187
Query: 728 L 728
+
Sbjct: 188 M 190
>TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog, partial
(50%)
Length = 968
Score = 28.9 bits (63), Expect = 4.2
Identities = 26/90 (28%), Positives = 40/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 6 YDSFELLTNSTSKIESIESYGSKLLLGCSNGSLLVYAPEHSVPAPEEMRKEAYVLERNVN 65
+ +L+ +S ++ YG L GC +LL +P PE M + Y L R +
Sbjct: 327 FHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGHRELPIPEHM--DIYHLTREIE 500
Query: 66 G---FAKKAVVSLQVVESREFLLSLSESIA 92
A +AVVS E R L +E++A
Sbjct: 501 ASDMSALEAVVSCD--EERLRLEKEAETLA 584
>BP067005
Length = 560
Score = 28.9 bits (63), Expect = 4.2
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 937 VIKISDDNMCSLCHKKIGTSVFAVYPNGKTLVHF--VCFRDSQSMKAVAK 984
VIKIS +N CSLC IG+S NG+T F VC R ++ AV K
Sbjct: 302 VIKISSEN-CSLCLYDIGSSRCCFQWNGRT*DFFGQVC*RICPNV*AVNK 448
>TC15183 similar to PIR|T49142|T49142 CCR4-associated factor 1-like protein
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(31%)
Length = 446
Score = 28.5 bits (62), Expect = 5.5
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Frame = +1
Query: 211 IGVIVDQNGKLRPEGRICWSEAPTEVVIQNPYALALLPRFVEIRSLRGPYPLIQT----- 265
+GV++++N ++P VVI+ +A L F IR L YP+I
Sbjct: 85 MGVMMNENQNMKP------------VVIREVWAFNLESEFQLIRELIDQYPIISMDTEFP 228
Query: 266 -IVFRNV------RHLRQSNNSVIIALENSIHCLFPVPLGAQIVQLTAAGNFEE 312
++FR+ R+LR S+N + L+ ++ L + +G + AAGN +
Sbjct: 229 GVIFRHPAAPHHHRNLRPSDNYRL--LKANVDTLNLIQVGLTLTD--AAGNLPD 378
>TC14281 similar to UP|Q9XHC6 (Q9XHC6) Cytochrome P450 monooxygenaseCYP93D1,
partial (97%)
Length = 1768
Score = 28.5 bits (62), Expect = 5.5
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Frame = -1
Query: 36 GSLLVYAPEHS-------VPAPEEMRKEAYVLERNVNGFAKKAVVSLQVVESREFLLSLS 88
G L+ A +HS VPA R +A L R A A + + R F LSLS
Sbjct: 1030 GFLMSSASDHSNTLAGPFVPARNMSRAKALALSRVSLLSAPSASIKFNRMSKRSFFLSLS 851
Query: 89 -ESIAFHKLPTFETIAVI 105
S+A +F T ++I
Sbjct: 850 APSVALASSCSFSTFSII 797
>CB828185
Length = 533
Score = 28.1 bits (61), Expect = 7.1
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +3
Query: 469 ESYNSNRFKKINKRHGSIPVSSEAREMASILDTALLQAMLLTGQPSMAENLLRVLNYCDL 528
ES F+ I+ SIP S + + S LD ML P + E LRVL C L
Sbjct: 159 ESLEDPYFEWIHWPQASIPFSDDELKYISHLDPFRDSEMLRMELPMIREACLRVLVLCTL 338
Query: 529 KICE 532
+ E
Sbjct: 339 FLKE 350
>AV779295
Length = 521
Score = 27.7 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 377 KTTIVHDSDKLDIFGDPLHLSRGSSMSDDMEPSSA 411
K T++H +L +G LH+ RG+S +++ SS+
Sbjct: 255 KNTLIHII*RLCTYGRKLHVPRGASSKKNLKASSS 359
>TC15669 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulatory subunit
6B homolog (26S proteasome AAA-ATPase subunit RPT3)
(Regulatory particle triple-A ATPase subunit 3), partial
(34%)
Length = 608
Score = 27.7 bits (60), Expect = 9.3
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +3
Query: 8 SFELLTNSTSKI----ESIESYGSKLLLGCSNGSLLVYAPEHSVPAPEEM 53
S+ LT +T+ + + ++GS +LL S+ SLL +P + P P M
Sbjct: 360 SWRWLTRTTASLAPQRDPTTTFGSSVLLTVSSSSLLPPSPSTATPTPSLM 509
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.133 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,773,470
Number of Sequences: 28460
Number of extensions: 211938
Number of successful extensions: 1052
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of query: 992
length of database: 4,897,600
effective HSP length: 99
effective length of query: 893
effective length of database: 2,080,060
effective search space: 1857493580
effective search space used: 1857493580
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC147964.8