TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147961.4 - phase: 0 
         (266 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB829611                                                              169  6e-43
BI420752                                                              115  8e-27
CB827288                                                               72  7e-14
AV409626                                                               27  3.6
TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snR...    27  4.7

>CB829611 
          Length = 430

 Score =  169 bits (427), Expect = 6e-43
 Identities = 80/117 (68%), Positives = 95/117 (80%)
 Frame = +3

Query: 146 ENAKICGVMLTDGSICKRPPVEKRVRCPEHKGMRINASTTKAIRSPKSELESIVRNAYRY 205
           ENAKICGV L DGSIC++PP EKR+RCPEHKGMR N ST KAI++P+S+  S     YRY
Sbjct: 18  ENAKICGVTLGDGSICRKPPAEKRLRCPEHKGMRTNVSTAKAIKAPESKSVS-----YRY 182

Query: 206 QNASHDVEDPPQRTVKCHVEEGITKTIICGIILDDGSTCRRQPVKGRKRCQEHKGRR 262
           QNASHD++DPPQ  V+  V+E IT+T ICGI+LD+G  CRR+PVKGRKRCQEHKG R
Sbjct: 183 QNASHDIKDPPQTLVERPVDEIITQTNICGIVLDNGFPCRREPVKGRKRCQEHKGMR 353



 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 27/45 (60%), Positives = 34/45 (75%)
 Frame = +3

Query: 150 ICGVMLTDGSICKRPPVEKRVRCPEHKGMRINASTTKAIRSPKSE 194
           ICG++L +G  C+R PV+ R RC EHKGMR N ST K I++PKSE
Sbjct: 264 ICGIVLDNGFPCRREPVKGRKRCQEHKGMRRNVSTAKVIKAPKSE 398


>BI420752 
          Length = 593

 Score =  115 bits (288), Expect = 8e-27
 Identities = 54/67 (80%), Positives = 60/67 (88%)
 Frame = +2

Query: 2   SDDSSLRTGRSLFQEIFSQGFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTISNGTRR 61
           SDD+S + GR LFQEIFSQGFPIVYRWAPMQN+ DALRTE+QLL TFDYAWNT +NGTRR
Sbjct: 392 SDDASPQKGRPLFQEIFSQGFPIVYRWAPMQNKEDALRTEAQLLDTFDYAWNTSNNGTRR 571

Query: 62  PDDIHQM 68
           PDDI +M
Sbjct: 572 PDDILRM 592


>CB827288 
          Length = 199

 Score = 72.4 bits (176), Expect = 7e-14
 Identities = 33/36 (91%), Positives = 34/36 (93%)
 Frame = +1

Query: 231 TIICGIILDDGSTCRRQPVKGRKRCQEHKGRRIRAN 266
           T ICGIILDDGSTCRRQPVKGRKRC EHKGRRIRA+
Sbjct: 1   TNICGIILDDGSTCRRQPVKGRKRCLEHKGRRIRAS 108



 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 26/34 (75%)
 Frame = +1

Query: 150 ICGVMLTDGSICKRPPVEKRVRCPEHKGMRINAS 183
           ICG++L DGS C+R PV+ R RC EHKG RI AS
Sbjct: 7   ICGIILDDGSTCRRQPVKGRKRCLEHKGRRIRAS 108


>AV409626 
          Length = 411

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 23/91 (25%), Positives = 42/91 (45%)
 Frame = +1

Query: 70  NKLASGTRTFSDVAKLILPFTQKKVGIPIKSSKLHLTDDKLDEADSGSYNVLSRVFKFNR 129
           N  AS +   S +AK + PF  + VG           +  L++A S S N+L  + K ++
Sbjct: 19  NDSASKSALPSHIAKTLTPF-DRSVG-----------NYGLNKAASHSQNILELLHKVDQ 162

Query: 130 SRPRIVQDTTVGSATNENAKICGVMLTDGSI 160
           SR   +   T  S  + ++++     +DG +
Sbjct: 163 SREHGIATNTSTSNCHLSSRVMDTEYSDGPV 255


>TC11756 weakly similar to GB|AAH01494.1|16306637|BC001494 U5 snRNP-specific
           40 kDa protein (hPrp8-binding) {Homo sapiens;} , partial
           (43%)
          Length = 719

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 11/37 (29%), Positives = 16/37 (42%)
 Frame = +3

Query: 20  QGFPIVYRWAPMQNEGDALRTESQLLSTFDYAWNTIS 56
           + FP+   W   +  G     E    S+ DY W+T S
Sbjct: 372 RNFPLECAWGMQELHGSKRSQECSFRSSLDYRWDTDS 482


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,244,167
Number of Sequences: 28460
Number of extensions: 51646
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of query: 266
length of database: 4,897,600
effective HSP length: 89
effective length of query: 177
effective length of database: 2,364,660
effective search space: 418544820
effective search space used: 418544820
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)