TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147961.1 - phase: 0 
         (46 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11584 similar to UP|O23679 (O23679) CER1 protein, partial (30%)      47  6e-07
TC12306 weakly similar to UP|AAR90847 (AAR90847) Glossy1 protein...    30  0.14
TC8095                                                                 25  3.3
TC15053 similar to UP|Q9SGU0 (Q9SGU0) T6H22.8.1 protein, partial...    25  4.4
TC16307 similar to UP|Q9SGU0 (Q9SGU0) T6H22.8.1 protein, partial...    25  4.4
TC8587 similar to UP|Q84MD8 (Q84MD8) At4g21470, partial (97%)          24  5.7
TC11448                                                                24  5.7
TC15728 similar to AAS09986 (AAS09986) MYB transcription factor,...    24  7.4
TC8552                                                                 24  7.4
TC15200 similar to UP|Q94G21 (Q94G21) Cathepsin B-like cysteine ...    24  7.4
BP041113                                                               23  9.7

>TC11584 similar to UP|O23679 (O23679) CER1 protein, partial (30%)
          Length = 617

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 17/28 (60%), Positives = 25/28 (88%)
 Frame = +1

Query: 1  MASKPGILTNWPWEPLGSFKVLLIYSYI 28
          MAS+PGILT+WPW+PLGSFK +++  ++
Sbjct: 46 MASRPGILTDWPWKPLGSFKYMILAPWV 129


>TC12306 weakly similar to UP|AAR90847 (AAR90847) Glossy1 protein, partial
           (8%)
          Length = 586

 Score = 29.6 bits (65), Expect = 0.14
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 8   LTNWPWEPLGSFKVLLIYSYIF 29
           L+ WPWE LG FK LL   +++
Sbjct: 257 LSTWPWENLGLFKYLLYGPFVW 322


>TC8095 
          Length = 1147

 Score = 25.0 bits (53), Expect = 3.3
 Identities = 13/31 (41%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
 Frame = -1

Query: 16   LGS-FKVLLIYSYIFTKTNASPSFFLTHSLN 45
            LGS F ++ ++ +I   TNA  +F+LT S N
Sbjct: 1084 LGSHFHLIFMFLFIDQMTNALDTFYLTFSAN 992


>TC15053 similar to UP|Q9SGU0 (Q9SGU0) T6H22.8.1 protein, partial (4%)
          Length = 504

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 1   MASKPGILTNWPWEPLGSF 19
           + S+PG LT+W ++ + SF
Sbjct: 108 VTSRPGYLTDWKFDDVSSF 164


>TC16307 similar to UP|Q9SGU0 (Q9SGU0) T6H22.8.1 protein, partial (8%)
          Length = 607

 Score = 24.6 bits (52), Expect = 4.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 1   MASKPGILTNWPWEPLGSF 19
           + S+PG LT+W ++ + SF
Sbjct: 213 VTSRPGYLTDWKFDDVSSF 269


>TC8587 similar to UP|Q84MD8 (Q84MD8) At4g21470, partial (97%)
          Length = 1519

 Score = 24.3 bits (51), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (49%)
 Frame = +3

Query: 7    ILTNWPWEPLGSFKVLLIYSYIFTKTNASPSFFLTHSL 44
            +   WP+  L +FKV+ I S I         FF+ HSL
Sbjct: 1344 VTIKWPFTFL*TFKVIWILSLI-------APFFMVHSL 1436


>TC11448 
          Length = 590

 Score = 24.3 bits (51), Expect = 5.7
 Identities = 11/19 (57%), Positives = 13/19 (67%)
 Frame = -3

Query: 7   ILTNWPWEPLGSFKVLLIY 25
           ILT   WE LG F V+L+Y
Sbjct: 264 ILTPTTWECLG*FLVILVY 208


>TC15728 similar to AAS09986 (AAS09986) MYB transcription factor, partial
           (34%)
          Length = 1207

 Score = 23.9 bits (50), Expect = 7.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 22  LLIYSYIFTKTNASPSFFLTHSLNI 46
           LLIYSY +T  N    FF+ H L I
Sbjct: 80  LLIYSYTYTNIN-DLLFFVLHGLII 151


>TC8552 
          Length = 535

 Score = 23.9 bits (50), Expect = 7.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 17  GSFKVLLIYSYIF 29
           GSF +LL+Y YIF
Sbjct: 483 GSFLILLMYQYIF 521


>TC15200 similar to UP|Q94G21 (Q94G21) Cathepsin B-like cysteine proteinase,
           partial (23%)
          Length = 541

 Score = 23.9 bits (50), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 23  LIYSYIFTKTNASPSFFLTH 42
           +IY YI  +T+AS S  +TH
Sbjct: 312 IIYIYIQNETSASASMSITH 253


>BP041113 
          Length = 503

 Score = 23.5 bits (49), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 6   GILTNWPWEPLGSFKVLLIYSYIFTKTNA 34
           G+   W W P G++ V   YS++   T A
Sbjct: 220 GVEDKWLWLPGGTYTVNSAYSFLQAPTLA 306


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.137    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 915,044
Number of Sequences: 28460
Number of extensions: 8218
Number of successful extensions: 79
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of query: 46
length of database: 4,897,600
effective HSP length: 22
effective length of query: 24
effective length of database: 4,271,480
effective search space: 102515520
effective search space used: 102515520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)