BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147960.7 + phase: 0
(248 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP045021 29 0.66
TC20104 similar to UP|FL3L_MOUSE (P49772) SL cytokine precursor ... 29 0.66
TC12734 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (11%) 27 2.5
TC16371 weakly similar to UP|P92169 (P92169) Serine repeat antig... 27 2.5
TC13938 27 4.3
TC12631 27 4.3
TC8451 GB|CAA61589.1|897771|LJAS1GENE asparagine synthase (gluta... 26 7.3
AV778016 26 7.3
BP077804 25 9.5
TC17191 homologue to UP|Q9SL38 (Q9SL38) At2g18090 protein, parti... 25 9.5
TC8046 similar to UP|Q7XJC2 (Q7XJC2) Adenine phosphoribosyltrans... 25 9.5
>BP045021
Length = 347
Score = 29.3 bits (64), Expect = 0.66
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 231 DVKQKAIVKDLSKILGSK 248
DVKQK +VK+LSKI G K
Sbjct: 347 DVKQKTVVKELSKIWGPK 294
>TC20104 similar to UP|FL3L_MOUSE (P49772) SL cytokine precursor
(Fms-related tyrosine kinase 3 ligand) (Flt3 ligand)
(Flt3L), partial (6%)
Length = 609
Score = 29.3 bits (64), Expect = 0.66
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 53 LPEVLRHSLPSKLFRDETASSSSFSASKWVLQSDPKLRS 91
+P + RHS R TA SSS S+S+ +L S P+ S
Sbjct: 178 VPLLRRHSTTITRTRTRTAGSSSSSSSRLLLSSSPRFYS 294
>TC12734 similar to UP|Q9LM78 (Q9LM78) F2D10.25, partial (11%)
Length = 936
Score = 27.3 bits (59), Expect = 2.5
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 11/67 (16%)
Frame = +2
Query: 6 GRLAGKEAAYFFQESKQAVTKLAQ--------KNNPISKT---NVVDQRHVVQDNADVLP 54
GR++G EA FFQ S + LAQ K + +T N + V Q D+ P
Sbjct: 218 GRISGAEAVSFFQGSNLSKQVLAQVWMYADQAKTGFLGRTEFYNALRLVTVAQSKRDLTP 397
Query: 55 EVLRHSL 61
++++ +L
Sbjct: 398 DIVKAAL 418
>TC16371 weakly similar to UP|P92169 (P92169) Serine repeat antigen
(Fragment), partial (13%)
Length = 500
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 60 SLPSKLFRDETASSSSFSASKWVLQSDPKLRSSVSPDAINPL 101
++PS+ + SSSSFS+++W L S SS AI+ L
Sbjct: 166 TIPSESSSASSNSSSSFSSTRWSLSSSEASTSSSIIPAISLL 41
>TC13938
Length = 584
Score = 26.6 bits (57), Expect = 4.3
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +3
Query: 36 KTNVVDQRHVVQDNADVLPEVLRHSLPSKLFRDETASSSSFSASKWVLQ--SDPKLRSSV 93
KTN V +++ ++ L L PS ++++ S + +S+ +LQ S + +SSV
Sbjct: 222 KTNSVMKKN--SGSSQKLGSFLSPGAPSN--KEKSVESQKWWSSERMLQPASSSRRQSSV 389
Query: 94 SPDAINPLRAFVSLPQVTFGARRWELPEAKHGVSASTANELRQ 136
+ + P + ++P A RW VS+S AN Q
Sbjct: 390 ASSGLTPFNSGRTIPSKWDDAERWICSP----VSSSYANNQHQ 506
>TC12631
Length = 870
Score = 26.6 bits (57), Expect = 4.3
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 187 HNMGDLKTKGKDVVEPQLENIKNYFVPMKVWAENMSRKWHLEREDVKQKAIVKDLSK 243
H +K +GK + PQ+ + + Y V A++ L+++ K +++V D+ K
Sbjct: 190 HMAAVVKARGKGITIPQIIDEEKYDEKESVGADSQLTTPLLQKQHEKLESVVVDIEK 360
>TC8451 GB|CAA61589.1|897771|LJAS1GENE asparagine synthase
(glutamine-hydrolysing) {Lotus corniculatus var.
japonicus;} , complete
Length = 2148
Score = 25.8 bits (55), Expect = 7.3
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -1
Query: 32 NPISKTNVVDQRHVVQDNADVLPEVLRHSLPSKLFRDETASSSSFSASKWVLQSDPKLRS 91
N +SK + R Q N D+L + + + R + +SS + W + PK+ S
Sbjct: 1308 NSLSKNGTLASRP--QANVDLLARKQSYWWSALILRHVSV*NSSLLGALWKYKYPPKISS 1135
Query: 92 SVSPD 96
SP+
Sbjct: 1134 DPSPE 1120
>AV778016
Length = 570
Score = 25.8 bits (55), Expect = 7.3
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Frame = -2
Query: 182 SKLELHNMGDLKTKGKDVVEPQ--------LENIKNYFVPMKVWAENMSRKWHLERED 231
+K LH D + K +++ Q LENI+++ + ++W + W++ ED
Sbjct: 431 AKQALHAAVDEENKKLEIIPKQYLADWKRWLENIRDWCISRQLWWGHQIPAWYVTLED 258
>BP077804
Length = 399
Score = 25.4 bits (54), Expect = 9.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 65 LFRDETASSSSFSASKWVLQSDPKLRSSVSPDAIN 99
L +ETA+SSSFS++ + +P + S+S AI+
Sbjct: 349 LMMEETATSSSFSSAP--AEPEPSQQRSLSDSAID 251
>TC17191 homologue to UP|Q9SL38 (Q9SL38) At2g18090 protein, partial (5%)
Length = 598
Score = 25.4 bits (54), Expect = 9.5
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = -3
Query: 65 LFRDETASSSSFSASKWVLQSDPKLRSSVSPDAINPLRAFVSLPQV 110
+ +++ S SSFS +++ +Q++ L S + ++NP R + + Q+
Sbjct: 536 IISNQSGSISSFSHTRFPIQTNTALTSPIFNSSLNP-RVYFNFSQL 402
>TC8046 similar to UP|Q7XJC2 (Q7XJC2) Adenine phosphoribosyltransferase
(Fragment), partial (85%)
Length = 1298
Score = 25.4 bits (54), Expect = 9.5
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 68 DETASSSSFSASKWVLQSDPKLRSSVS 94
+ T+SSSS S+S Q+ P LRS+ S
Sbjct: 178 NSTSSSSSSSSSSIRFQNSPPLRSTAS 258
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.129 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,549,050
Number of Sequences: 28460
Number of extensions: 41999
Number of successful extensions: 197
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of query: 248
length of database: 4,897,600
effective HSP length: 88
effective length of query: 160
effective length of database: 2,393,120
effective search space: 382899200
effective search space used: 382899200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147960.7