TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147959.10 + phase: 1 /pseudo
         (378 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV419469                                                               31  0.30
TC7823 similar to UP|O24470 (O24470) Lipoxygenase  , partial (96%)     29  1.5
CB827913                                                               28  3.3
TC18501                                                                27  4.3
TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3,...    27  5.6
TC18125 similar to UP|Q9FLH1 (Q9FLH1) Lysosomal Pro-X carboxypep...    26  9.5
TC10697                                                                26  9.5
TC9008 homologue to PIR|T06773|T06773 ferredoxin-NADP reductase ...    26  9.5

>AV419469 
          Length = 305

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 1   DGRRVQDFFLSMEVAIRNHPLWA 23
           D   VQ+F  +ME A + HPLWA
Sbjct: 236 DSAAVQEFLANMEAAFKAHPLWA 304


>TC7823 similar to UP|O24470 (O24470) Lipoxygenase  , partial (96%)
          Length = 2909

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
 Frame = -3

Query: 85   LHNEASWLLAEKELQKINAFKAPQEKLSTIMNC--CRVI-NNLLLNAAMSEYVPAGADDF 141
            LH    WL+A+  +  ++ F  P   LS  +NC  C VI  ++LLN   +      + + 
Sbjct: 2127 LHLRPPWLVAQVSMTSLHNFFPPSL*LSVFLNCIICWVI*RDILLNPLRNSIPNL*SINS 1948

Query: 142  IPVLIY 147
            I V++Y
Sbjct: 1947 IRVVLY 1930


>CB827913 
          Length = 567

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 25/90 (27%), Positives = 38/90 (41%), Gaps = 16/90 (17%)
 Frame = -3

Query: 148 VTIKARLALLVQTSNSLSCIEGKQNSSQKLSIISQILCQLRH--------------L*LN 193
           +TI+  L LL+   +S  C   +      L  + Q L QL+H                 +
Sbjct: 340 LTIQLHL*LLIIQLDSCCCHNPQPQEESSLHFLFQ-LSQLQH*SPFQKFQLFEPFPFHSH 164

Query: 194 *ILNPSQLMKSNLRSAC--KQPNWPRKSQV 221
            +L   QL+  NL      +QP+WPR SQ+
Sbjct: 163 PLLQHQQLLSGNLSHQLHPRQPHWPRPSQM 74


>TC18501 
          Length = 591

 Score = 27.3 bits (59), Expect = 4.3
 Identities = 11/24 (45%), Positives = 19/24 (78%)
 Frame = -3

Query: 169 GKQNSSQKLSIISQILCQLRHL*L 192
           G+ +SSQ L+++  ILC ++H+*L
Sbjct: 421 GQSSSSQSLTLLDIILCLVQHI*L 350


>TC12704 UP|CAE45596 (CAE45596) S-receptor kinase-like protein 3, complete
          Length = 2481

 Score = 26.9 bits (58), Expect = 5.6
 Identities = 25/70 (35%), Positives = 35/70 (49%), Gaps = 6/70 (8%)
 Frame = +1

Query: 67   ISLLQTFLKPEHLDIPPVLHNEASWLLAEKELQK--INAFKAPQEKL----STIMNCCRV 120
            I+LL    +PE+    P + +    L  EKEL K  + AF    + L    ST  NC RV
Sbjct: 2185 IALLCVQQRPEYR---PDMLSVVLMLNGEKELPKPSLPAFYTGNDDLLWPESTSKNCERV 2355

Query: 121  INNLLLNAAM 130
            I +++LN  M
Sbjct: 2356 IKHVILNGFM 2385


>TC18125 similar to UP|Q9FLH1 (Q9FLH1) Lysosomal Pro-X carboxypeptidase,
           partial (22%)
          Length = 585

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 20/81 (24%), Positives = 32/81 (38%)
 Frame = +3

Query: 16  IRNHPLWATATEEDIDCAMEGLEKYIMTKLFSRTFAASPEDAKIDHEISEKISLLQTFLK 75
           +   P W T TE      +  L+K+    +FS           +   ISE I  L T   
Sbjct: 87  VEPRPKWIT-TEFGGHNILAPLKKFGSNIIFSNGLLDPWTGGSVLQNISESIVSLVTKEG 263

Query: 76  PEHLDIPPVLHNEASWLLAEK 96
             H+D+     N+  WL+ ++
Sbjct: 264 AHHIDLRASTGNDPDWLVEQR 326


>TC10697 
          Length = 487

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 19/45 (42%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
 Frame = +2

Query: 171 QNSSQKLSIISQILCQLRHL*LN*ILNPSQLMKSNLRSAC-KQPN 214
           QNSS  + ++  +LC+L +L L+* L  + L K NL   C K PN
Sbjct: 287 QNSSDVVFVLHILLCELLYL-LS*ALLYATLEKLNLTYDCMKVPN 418


>TC9008 homologue to PIR|T06773|T06773 ferredoxin-NADP reductase  - garden
           pea                 (fragment) {Pisum sativum;} ,
           partial (18%)
          Length = 737

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 290 VLQHGTNYPYMEAESKDLAMEDVDILLNHYKDLVAKYTIICKAINYLSMSEKEPLLHQLE 349
           V+ HG N PY E +S        D+LL           I+C   +   +S +E ++  L 
Sbjct: 203 VIDHGGNVPYWEGQSYGFIPPVSDLLL---------ILILCFRSSLYLISGRESIMIDLR 355

Query: 350 MQ 351
           +Q
Sbjct: 356 LQ 361


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,276,069
Number of Sequences: 28460
Number of extensions: 79176
Number of successful extensions: 482
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of query: 378
length of database: 4,897,600
effective HSP length: 92
effective length of query: 286
effective length of database: 2,279,280
effective search space: 651874080
effective search space used: 651874080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)