TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147714.3 - phase: 0 /pseudo
         (1586 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG662087                                                              135  4e-32
TC18698                                                                57  2e-08
AV410603                                                               53  4e-07
BU494316                                                               31  1.3
TC19872 similar to UP|Q9LUT3 (Q9LUT3) Gb|AAD28294.1, partial (7%)      30  3.9
TC16574 similar to UP|Q9LVC9 (Q9LVC9) 60S acidic ribosomal prote...    29  5.1
TC12045 similar to UP|Q9FT86 (Q9FT86) Peroxin Pex14, partial (5%)      28  8.7

>BG662087 
          Length = 373

 Score =  135 bits (341), Expect = 4e-32
 Identities = 64/119 (53%), Positives = 85/119 (70%)
 Frame = +1

Query: 594 GKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREK 653
           GK RM VD+ DLNKA PKD++PLP ID LVD  + +++ S MD +SGY+QIKM P D +K
Sbjct: 16  GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195

Query: 654 TSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEEQH 712
           T+F+T    +CY+ +PFGL NAGATYQ  M  +F D + + +EVY+D+MIVKS     H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372


>TC18698 
          Length = 808

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 31/62 (50%), Positives = 38/62 (61%)
 Frame = -2

Query: 651 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSKDEE 710
           ++KT+       + Y+VMP GL N   TYQR M  +FH  I K VEVYV+DMIVKS  E 
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKSSQE* 628

Query: 711 QH 712
            H
Sbjct: 627 FH 622


>AV410603 
          Length = 162

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 26/51 (50%), Positives = 34/51 (65%)
 Frame = +1

Query: 611 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWG 661
           KD+FP+P +D L+D    S+ FS +D  SGY+QI + PEDR KT F T  G
Sbjct: 10  KDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162


>BU494316 
          Length = 392

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +1

Query: 292 CNY*RGDWIWS*AC-VCY---TRSHCER 315
           CN+ RGDWIWS  C  CY    R  C++
Sbjct: 46  CNFSRGDWIWSEKCSSCY***PRDFCQK 129


>TC19872 similar to UP|Q9LUT3 (Q9LUT3) Gb|AAD28294.1, partial (7%)
          Length = 542

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 23/71 (32%), Positives = 35/71 (48%)
 Frame = +3

Query: 262 TPRE*A*RRSRVFPNIRCLHKNFP*CWVCQCNY*RGDWIWS*ACVCYTRSHCERLGCHRH 321
           TP E*   R RV   I CL+  F   W+CQ ++   +W+W  +C   T S    L  +++
Sbjct: 111 TPME*L--RERV---IVCLYF*F---WMCQLSHPTPNWLWIASCAQKTNSESNML--YKN 260

Query: 322 SFNHACFRVMC 332
           S   +  R+ C
Sbjct: 261 SVESSRSRLQC 293


>TC16574 similar to UP|Q9LVC9 (Q9LVC9) 60S acidic ribosomal protein P3,
            partial (82%)
          Length = 619

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 10/26 (38%), Positives = 11/26 (41%)
 Frame = +2

Query: 1552 LCCQEGLLWWCFNSYTHGWCRTSKSC 1577
            LCC  G  WWC       WC   + C
Sbjct: 227  LCCLPGDCWWCCGCC*SWWCCCCRRC 304


>TC12045 similar to UP|Q9FT86 (Q9FT86) Peroxin Pex14, partial (5%)
          Length = 609

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 288 WVCQCN-Y*RGDWIWS*ACVCYTRSHCERLGCHRH 321
           W+  C+   R DW+W+  C C +R H  R G  R+
Sbjct: 324 WLISCHRLLRDDWLWASDCFC-SRRHSYRRGLRRN 223


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.346    0.153    0.549 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,214,457
Number of Sequences: 28460
Number of extensions: 511849
Number of successful extensions: 4683
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4682
length of query: 1586
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1484
effective length of database: 1,994,680
effective search space: 2960105120
effective search space used: 2960105120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 62 (28.5 bits)