BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.14 + phase: 0
(129 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP066094 55 5e-09
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 35 0.004
BP075943 28 0.49
AV408509 26 1.9
TC15643 similar to UP|O64720 (O64720) At2g02560 protein, partial... 25 3.2
TC8131 similar to UP|Q9XFM6 (Q9XFM6) Progesterone-binding protei... 25 4.2
BP040941 25 5.5
AW428678 24 7.1
TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycop... 24 7.1
AW164126 24 9.3
>BP066094
Length = 532
Score = 54.7 bits (130), Expect = 5e-09
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +2
Query: 1 MKVKSAFLNGAISEEVYVKQPPGFEDLKHPDYVYK 35
M VKSAFLNG ISEEVYV QPPG ED K+ D+++K
Sbjct: 152 MNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFK 256
Score = 29.3 bits (64), Expect = 0.22
Identities = 13/17 (76%), Positives = 14/17 (81%)
Frame = +2
Query: 37 EIEMSMMGELKFFLRIQ 53
E EM MMGELK+FL IQ
Sbjct: 482 EFEMRMMGELKYFLGIQ 532
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 35.0 bits (79), Expect = 0.004
Identities = 17/61 (27%), Positives = 34/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 37 EIEMSMMGELKFFLRIQINQCKDE--VYVHQSKYTKDLLMKFKVDDCNEMNTPMHPTCTL 94
E +M +G L +QI++ + + +++ Q Y + +L +F + DCN ++TP+ L
Sbjct: 176 EFDMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKL 355
Query: 95 S 95
S
Sbjct: 356 S 358
>BP075943
Length = 547
Score = 28.1 bits (61), Expect = 0.49
Identities = 11/38 (28%), Positives = 22/38 (56%)
Frame = -3
Query: 36 DEIEMSMMGELKFFLRIQINQCKDEVYVHQSKYTKDLL 73
D+ + +GE K+FL ++I + + ++Q KY L+
Sbjct: 443 DQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLI 330
>AV408509
Length = 428
Score = 26.2 bits (56), Expect = 1.9
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -2
Query: 52 IQINQCKDEVYVHQSKYTKDLLMKFKV 78
IQ+NQ ++++ Q KY DLL K ++
Sbjct: 199 IQVNQEHGKMFLLQGKYAADLL*KLRI 119
>TC15643 similar to UP|O64720 (O64720) At2g02560 protein, partial (17%)
Length = 966
Score = 25.4 bits (54), Expect = 3.2
Identities = 8/26 (30%), Positives = 16/26 (60%)
Frame = -1
Query: 16 VYVKQPPGFEDLKHPDYVYKDEIEMS 41
+++++PP HP Y KD+ ++S
Sbjct: 282 LHIRKPPSSTQAHHPQYA*KDQDQLS 205
>TC8131 similar to UP|Q9XFM6 (Q9XFM6) Progesterone-binding protein-like,
partial (67%)
Length = 1227
Score = 25.0 bits (53), Expect = 4.2
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +1
Query: 39 EMSMMGELKFFLRIQINQCKDEVYVHQSKYTKDLLMKFKVDDCNEMNTPMHPTCTLSEED 98
E + G++ +++ +D Y SKY K +K V +T P+ + + D
Sbjct: 439 EKDLTGDISGLGSFELDALQDWEYKFMSKYVKVGTIKTTVTVTAPESTTGEPSESTTTPD 618
Query: 99 ADAKVD 104
ADA D
Sbjct: 619 ADADDD 636
>BP040941
Length = 559
Score = 24.6 bits (52), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 48 FFLRIQINQCKDEVYVHQSKYTKDLLMKFK 77
++L + + CK+ YV TKD L + K
Sbjct: 152 YYLNLSLINCKNLSYVFSLSSTKDYLQQLK 241
>AW428678
Length = 394
Score = 24.3 bits (51), Expect = 7.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 17 YVKQPPGFEDLKHPDYVYK 35
Y K PP + HP Y YK
Sbjct: 41 YYKSPPPPSPIPHPPYYYK 97
>TC14279 similar to UP|Q09085 (Q09085) Hydroxyproline-rich glycoprotein
(HRGP) (Fragment), partial (57%)
Length = 941
Score = 24.3 bits (51), Expect = 7.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 17 YVKQPPGFEDLKHPDYVYK 35
Y K PP + HP Y YK
Sbjct: 277 YYKSPPPPSPIPHPPYYYK 333
>AW164126
Length = 387
Score = 23.9 bits (50), Expect = 9.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 17 YVKQPPGFEDLKHPDYVYK 35
Y K PP + HP Y YK
Sbjct: 224 YYKSPPPPSPVPHPPYYYK 280
Score = 23.9 bits (50), Expect = 9.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 17 YVKQPPGFEDLKHPDYVYK 35
Y K PP + HP Y YK
Sbjct: 39 YYKSPPPPSPVPHPPYYYK 95
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,040,095
Number of Sequences: 28460
Number of extensions: 23825
Number of successful extensions: 80
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of query: 129
length of database: 4,897,600
effective HSP length: 80
effective length of query: 49
effective length of database: 2,620,800
effective search space: 128419200
effective search space used: 128419200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)
Medicago: description of AC147714.14