BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.6 + phase: 0
(80 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC18227 similar to GB|BAC42746.1|26451290|AK118120 protein trans... 75 2e-15
BP039880 29 0.14
TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycop... 28 0.23
BI420403 27 0.52
TC19261 similar to UP|BAD06577 (BAD06577) Cell wall protein Awa1... 27 0.89
TC8787 similar to UP|Q90YX0 (Q90YX0) Ribosomal protein P1, parti... 27 0.89
TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pro... 27 0.89
TC16676 similar to UP|P93028 (P93028) Ubiquitin activating enzym... 26 1.2
TC12700 similar to UP|P93390 (P93390) Phosphate/phosphoenolpyruv... 26 1.2
TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation ... 25 2.0
BP057299 25 2.0
TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete 25 2.0
TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22... 25 2.0
TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-ric... 25 2.6
AV777838 25 2.6
AV778743 25 3.4
AV768140 25 3.4
TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precu... 25 3.4
AV424046 25 3.4
AV425458 25 3.4
>TC18227 similar to GB|BAC42746.1|26451290|AK118120 protein transport
protein subunit - like {Arabidopsis thaliana;}, partial
(58%)
Length = 306
Score = 75.5 bits (184), Expect = 2e-15
Identities = 42/69 (60%), Positives = 45/69 (64%), Gaps = 8/69 (11%)
Frame = +1
Query: 5 GGAPQRGSAAATASMRRRKTAGG--------GASGGAAGTMLQFYTDDAPGLKISPNVVL 56
G RGSAAATA MRRR+ G GAS G ML+FYTDDAPGLKISP VVL
Sbjct: 100 GVVAPRGSAAATAGMRRRRLGTGSGNSSASVGASSGGGSNMLRFYTDDAPGLKISPTVVL 279
Query: 57 VMSIGFIAF 65
VMS+ FI F
Sbjct: 280 VMSLCFIGF 306
>BP039880
Length = 576
Score = 29.3 bits (64), Expect = 0.14
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -1
Query: 4 GGGAPQRGSAAA--TASMRRRKTAGGGASG 31
GGGAP+ AAA T + RR++ GG+SG
Sbjct: 474 GGGAPEEAEAAASGTRPLFRRRSPCGGSSG 385
>TC18379 similar to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (8%)
Length = 584
Score = 28.5 bits (62), Expect = 0.23
Identities = 16/32 (50%), Positives = 16/32 (50%)
Frame = -1
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGGA Q G A A AGGG GGA G
Sbjct: 320 GGGAAQYGGGAGGAG------AGGGGGGGAIG 243
>BI420403
Length = 425
Score = 27.3 bits (59), Expect = 0.52
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 2 ALGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTML 38
+LGG P + + R+T+GGG GG G L
Sbjct: 285 SLGGENPWKAPKIMAHVVDHRQTSGGGGGGGGEGGCL 395
>TC19261 similar to UP|BAD06577 (BAD06577) Cell wall protein Awa1p, partial
(3%)
Length = 495
Score = 26.6 bits (57), Expect = 0.89
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 10 RGSAAATASMRRRKTAGGGASGGAA 34
RG+AAA R + GGGA GG A
Sbjct: 245 RGAAAAGGRARGGRPRGGGARGGRA 171
>TC8787 similar to UP|Q90YX0 (Q90YX0) Ribosomal protein P1, partial (15%)
Length = 925
Score = 26.6 bits (57), Expect = 0.89
Identities = 17/40 (42%), Positives = 18/40 (44%)
Frame = -3
Query: 3 LGGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYT 42
L GGA + G A T T GGG GGA T F T
Sbjct: 215 LTGGATRTGGARIT*C-----TVGGGGRGGAENTGTMFLT 111
>TC15253 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
(ATAGP4) (AT5G10430/F12B17_220), partial (42%)
Length = 575
Score = 26.6 bits (57), Expect = 0.89
Identities = 14/32 (43%), Positives = 16/32 (49%)
Frame = -2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GG A G AA + AGGG +GG AG
Sbjct: 307 GGEAEGAGVAAGGVVVGAGVAAGGGVAGGGAG 212
>TC16676 similar to UP|P93028 (P93028) Ubiquitin activating enzyme
(Ubiquitin-activating enzyme E1) , partial (8%)
Length = 712
Score = 26.2 bits (56), Expect = 1.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -1
Query: 20 RRRKTAGGGASGGAAGTMLQFY 41
RRR + GG GG G L FY
Sbjct: 301 RRRSSRSGGGGGGGGGIPLFFY 236
>TC12700 similar to UP|P93390 (P93390) Phosphate/phosphoenolpyruvate
translocator, partial (9%)
Length = 442
Score = 26.2 bits (56), Expect = 1.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -3
Query: 20 RRRKTAGGGASGGAAG 35
RRRK AGGG GG G
Sbjct: 182 RRRKVAGGGWCGGGCG 135
>TC8694 similar to UP|IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c), partial (23%)
Length = 986
Score = 25.4 bits (54), Expect = 2.0
Identities = 13/29 (44%), Positives = 14/29 (47%)
Frame = +2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGG 32
GGG P + AA R R GGG GG
Sbjct: 575 GGGRPFAFNQAAGGYSRDRTGRGGGGGGG 661
>BP057299
Length = 551
Score = 25.4 bits (54), Expect = 2.0
Identities = 12/32 (37%), Positives = 16/32 (49%)
Frame = +3
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
GGG+ + AA A+ R G A+GG G
Sbjct: 219 GGGSSGDAAVAAAAAAARAHDGGDTAAGGGGG 314
>TC15474 UP|Q7Y1B9 (Q7Y1B9) Ammonium transporter, complete
Length = 1950
Score = 25.4 bits (54), Expect = 2.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDA 45
GGG QR A + RR+ AGG G + + D A
Sbjct: 1265 GGGLRQRWEAVRVVNGWRREVAGGAGD*DIGGVWVGYGDDGA 1390
>TC16562 similar to GB|AAM78073.1|21928089|AY125563 AT4g24660/F22K18_140
{Arabidopsis thaliana;}, partial (29%)
Length = 621
Score = 25.4 bits (54), Expect = 2.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -1
Query: 5 GGAPQRGSAAATASMR--RRKTAGGGASGGA 33
GG +AAA A R RR++ GG+SGG+
Sbjct: 567 GGGRLAAAAAAVAGRR*FRRRSPCGGSSGGS 475
Score = 23.9 bits (50), Expect = 5.8
Identities = 14/34 (41%), Positives = 16/34 (46%)
Frame = +3
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAAGTM 37
GGG G AAATA G G G+ GT+
Sbjct: 270 GGGIEPEGGAAATA-------LGVGRKNGSTGTV 350
>TC10832 weakly similar to UP|Q9SEE9 (Q9SEE9) Arginine/serine-rich protein,
partial (30%)
Length = 539
Score = 25.0 bits (53), Expect = 2.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 5 GGAPQRGSAAATASMR--RRKTAGGGASGGA 33
GG +R A A R R+ GGGA GGA
Sbjct: 245 GGGRERSGARERAGAR**ARRGRGGGARGGA 153
>AV777838
Length = 565
Score = 25.0 bits (53), Expect = 2.6
Identities = 12/31 (38%), Positives = 16/31 (50%)
Frame = -2
Query: 4 GGGAPQRGSAAATASMRRRKTAGGGASGGAA 34
GG G + RRR++ GG ASGG +
Sbjct: 369 GGDGVTGGGSHGRRRRRRRRSDGGVASGGGS 277
>AV778743
Length = 333
Score = 24.6 bits (52), Expect = 3.4
Identities = 9/38 (23%), Positives = 23/38 (59%)
Frame = -2
Query: 40 FYTDDAPGLKISPNVVLVMSIGFIAFVAVLHVVGKLYL 77
F+ ++PG+ + N++ + + + FV ++ + G LY+
Sbjct: 260 FHKMESPGVSV*KNLLEIHVLYVLRFVLIIRLQGVLYM 147
>AV768140
Length = 471
Score = 24.6 bits (52), Expect = 3.4
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = +1
Query: 14 AATASMRRRKTAGGGASGG 32
AA A RRR GGG+ GG
Sbjct: 265 AADAPRRRRPGGGGGSGGG 321
>TC14555 similar to UP|Q43558 (Q43558) Proline rich protein precursor,
partial (43%)
Length = 1038
Score = 24.6 bits (52), Expect = 3.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 1 MALGGGAPQRGSAAATASMRRRKTAGGGASGGAAG 35
++ GGG G A + AGGG GA G
Sbjct: 492 VSAGGGVAAGGGGVAGGGEKGGGEAGGGVLAGAGG 388
>AV424046
Length = 400
Score = 24.6 bits (52), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = +2
Query: 5 GGAPQRGSAAATASMRRRKTAGGGASGGAAGTML 38
G +P+R SA + RR AG GG+ +L
Sbjct: 164 GVSPRRASALPARAARRSSAAGVSMVGGSLNDLL 265
>AV425458
Length = 424
Score = 24.6 bits (52), Expect = 3.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 6 GAPQRGSAAATASMRRRKTAGGGASG 31
G+ G+ AA RRR GGG SG
Sbjct: 330 GSDSGGTFAAAQ*RRRRPVGGGGRSG 253
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.136 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 952,094
Number of Sequences: 28460
Number of extensions: 9179
Number of successful extensions: 182
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of query: 80
length of database: 4,897,600
effective HSP length: 56
effective length of query: 24
effective length of database: 3,303,840
effective search space: 79292160
effective search space used: 79292160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)
Medicago: description of AC147537.6