TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.14 - phase: 0 
         (176 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP061469                                                               55  1e-10
BP055191                                                               30  0.30
TC7985 similar to UP|O04002 (O04002) CDSP32 protein (Chloroplast...    28  1.2
AW164165                                                               27  1.5
TC11907 UP|Q9FXP3 (Q9FXP3) Homeobox-leucine zipper protein (Frag...    27  1.5
AV411243                                                               27  2.6
BU494198                                                               26  3.4
AV777395                                                               26  4.4
TC14304 similar to UP|Q94FU3 (Q94FU3) Ubiquitin conjugating enzy...    26  4.4
TC16363 UP|Q84RQ3 (Q84RQ3) Sucrose transporter 4 protein, complete     26  4.4
TC11542 similar to UP|O04335 (O04335) At2g30600 protein, partial...    25  5.8
AV413145                                                               25  5.8
TC11498 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), pa...    25  5.8
AV765357                                                               25  5.8
TC10002                                                                25  5.8
BP062431                                                               25  7.5
AV781107                                                               25  7.5
BP078889                                                               25  7.5
AU240051                                                               25  9.8

>BP061469 
          Length = 482

 Score = 55.5 bits (132), Expect(2) = 1e-10
 Identities = 26/35 (74%), Positives = 30/35 (85%)
 Frame = -2

Query: 1   MEAWNSERHAFEIGSGEIGFSLLDVALILGIPVVG 35
           M+AW+SER AF +GSGEI  SLLDVALILG+PV G
Sbjct: 202 MKAWDSERQAFAVGSGEISMSLLDVALILGMPVGG 98



 Score = 25.4 bits (54), Expect(2) = 1e-10
 Identities = 14/27 (51%), Positives = 16/27 (58%)
 Frame = -1

Query: 35  GHRVELAEEQLFSELEEEYGASRAKRK 61
           G  V L EE+  S LEE Y A+  KRK
Sbjct: 101 GDPVVLTEEESLSGLEELYRAACGKRK 21


>BP055191 
          Length = 491

 Score = 29.6 bits (65), Expect = 0.30
 Identities = 12/36 (33%), Positives = 22/36 (60%)
 Frame = -1

Query: 49  LEEEYGASRAKRKVAMTSLEARLDSIGEDVSDDFVR 84
           LE+++GA+R  R  +  S+   +DS+ +   D+ VR
Sbjct: 242 LEKDFGANRTPRLTSYQSINKHIDSVSQKSEDNAVR 135


>TC7985 similar to UP|O04002 (O04002) CDSP32 protein (Chloroplast
           drought-induced stress protein of 32kDa), partial (80%)
          Length = 1207

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 57  RAKRKVAMTSLEARLDSIGEDVSDDFVRSFLLFTIGTFLSSIDGKVDSRYL 107
           +  R +A T + AR++    D    F+R   +  + TFL   DG++  RY+
Sbjct: 747 KLSRSMADTVVFARMNGDENDSCMQFLRDMEVVQVPTFLFIRDGQIRGRYV 899


>AW164165 
          Length = 343

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 27/44 (60%), Gaps = 3/44 (6%)
 Frame = +2

Query: 25  VALILGIPVVGHRVELAEE---QLFSELEEEYGASRAKRKVAMT 65
           V  + G+PV+G+ ++L E+   + F+++ E+YG   + R  A T
Sbjct: 164 VPAVPGLPVIGNLLQLKEKKPYKTFTQMAEKYGPIYSIRTGAFT 295


>TC11907 UP|Q9FXP3 (Q9FXP3) Homeobox-leucine zipper protein (Fragment),
           partial (7%)
          Length = 523

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 7/59 (11%)
 Frame = -1

Query: 112 NLDDVSGFAWGAAVIEDLCQWL-------DKRKDNNVQYVGGCLIFLQVSLICLSYYHY 163
           +L+D+   + G A   +LC W+           D  +Q     L+FL+V   CLS YH+
Sbjct: 184 HLEDLFLMSIGEA---ELCWWVLVKLVEDSYHSDQKIQQDCSSLVFLRVPN*CLSCYHF 17


>AV411243 
          Length = 363

 Score = 26.6 bits (57), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 60  RKVAMTSLEARLDSIGEDVSDDFV 83
           R  ++TSL A   S GED+S DFV
Sbjct: 106 RVESITSLVASFPSFGEDISVDFV 35


>BU494198 
          Length = 510

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3

Query: 86  FLLFTIGTFLSSIDGKVDSRYLSFLGNLDDVSG 118
           FLL +I TFLSS    V S YL+  GNL  + G
Sbjct: 393 FLLISI*TFLSS----VGSLYLTVCGNLLIIGG 479


>AV777395 
          Length = 607

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 155 LICLSYYHYLLLNCILPLSY 174
           L+ L YYHYL++ C +  ++
Sbjct: 387 LLFLQYYHYLIMKCHISYNF 446


>TC14304 similar to UP|Q94FU3 (Q94FU3) Ubiquitin conjugating enzyme 2
           (Ubiquitin-conjugating enzyme E2) (Ubiquitin-protein
           ligase) (Ubiquitin carrier protein) , partial (83%)
          Length = 1428

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
 Frame = +2

Query: 38  VELAEEQLFSE--LEEEYGASRAKRKVAMTSLEARLDSIGEDV 78
           VE   +QL SE    E+  +  +  K +   LE  LDS GEDV
Sbjct: 776 VEKYNQQLLSEQVASEQVSSEMSHVKSSRPVLERSLDSAGEDV 904


>TC16363 UP|Q84RQ3 (Q84RQ3) Sucrose transporter 4 protein, complete
          Length = 2164

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 140  NVQYVGGCLIFLQVSLICLSYYHYL 164
            N++Y+ GCL+   VS      YH+L
Sbjct: 1268 NLKYLNGCLLSCNVSCNLCGKYHWL 1342


>TC11542 similar to UP|O04335 (O04335) At2g30600 protein, partial (21%)
          Length = 756

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 131 QWLDKRKDNNVQYVG 145
           QWLD   + NVQY+G
Sbjct: 84  QWLDSHPNCNVQYIG 128


>AV413145 
          Length = 397

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +2

Query: 154 SLICLSYYHYLLLNCILPL 172
           +L CL + HY  L+CI PL
Sbjct: 20  NLYCLCHLHY*FLSCIPPL 76


>TC11498 similar to UP|Q8W240 (Q8W240) GT-2 factor (Fragment), partial (6%)
          Length = 592

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 130 CQWLDKRKDNNVQYVGGCLIFLQVSLIC----LSYYHYLLL 166
           C+W         Q +GG ++F   SLIC    LS++++L L
Sbjct: 444 CKW-------EKQLIGGGVVFFFSSLICYFSKLSFFYFLTL 545


>AV765357 
          Length = 378

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 147 CLIFLQVSLICLSYYHYLLLNCILPLSYIC 176
           C++ L  SL    + H L+L C L ++ +C
Sbjct: 123 CVVRLSFSLSSGLFVHLLILRCFLGVAAVC 34


>TC10002 
          Length = 453

 Score = 25.4 bits (54), Expect = 5.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 155 LICLSYYHYLLLNCILPLSYIC 176
           + C S+YH ++  C   ++YIC
Sbjct: 134 ITCFSFYHIIINWCFC*VTYIC 199


>BP062431 
          Length = 482

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 143 YVGGCLIFLQVSLICL-SYYH 162
           Y+G CL+FL V+  CL S YH
Sbjct: 115 YLGYCLVFLCVNPYCLASCYH 53


>AV781107 
          Length = 530

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
 Frame = -3

Query: 107 LSFLGNLDDVSGFAWGAAVIED-------LCQWLDKRKDN--NVQYVGGC 147
           L  L NL  +SG  WG  ++E+       L  WL +R+ +  + + V GC
Sbjct: 210 LKLLPNLGLISGRRWGNLLLEETTDLLEALLLWLPRRRRHRRSNKQVSGC 61


>BP078889 
          Length = 474

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 13/31 (41%), Positives = 16/31 (50%)
 Frame = +2

Query: 129 LCQWLDKRKDNNVQYVGGCLIFLQVSLICLS 159
           L  W+  RK  +     GCL+FL  S  CLS
Sbjct: 242 LRSWMALRKP*STTTFEGCLLFLGGSPTCLS 334


>AU240051 
          Length = 300

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (47%)
 Frame = -1

Query: 139 NNVQYVGGCLIFLQVSLICLSYYHYLLLNCI 169
           N   +V  CL    +SLI   Y+  + L CI
Sbjct: 198 NQRLFVSSCLSISNISLILKPYHTNIFLQCI 106


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,196,881
Number of Sequences: 28460
Number of extensions: 45392
Number of successful extensions: 327
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of query: 176
length of database: 4,897,600
effective HSP length: 84
effective length of query: 92
effective length of database: 2,506,960
effective search space: 230640320
effective search space used: 230640320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)