TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.10 - phase: 0 /pseudo
         (155 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP036028                                                               27  2.0
TC18953 similar to GB|AAC14614.1|3077912|AF012950 cytochrome B {...    26  2.7
AV407550                                                               26  3.5
TC13901 similar to UP|Q9FYU7 (Q9FYU7) UDP-glucose:sinapate gluco...    25  5.9
TC18085                                                                25  7.8
CB828560                                                               25  7.8

>BP036028 
          Length = 483

 Score = 26.6 bits (57), Expect = 2.0
 Identities = 11/23 (47%), Positives = 12/23 (51%), Gaps = 1/23 (4%)
 Frame = -1

Query: 49  EGGWNMGTVGDC*GL*GCCC-CH 70
           E GW   + G C G   CCC CH
Sbjct: 174 ERGWFKNSAGACCGCHQCCCQCH 106


>TC18953 similar to GB|AAC14614.1|3077912|AF012950 cytochrome B {Echinotrix
           diadema;}, partial (8%)
          Length = 688

 Score = 26.2 bits (56), Expect = 2.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 58  GDC*GL*GCCCC 69
           GDC*   GCCCC
Sbjct: 149 GDC*DPLGCCCC 114


>AV407550 
          Length = 310

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 65 GCCCCHNMLE 74
          GCCCC +MLE
Sbjct: 47 GCCCCGSMLE 18


>TC13901 similar to UP|Q9FYU7 (Q9FYU7) UDP-glucose:sinapate
           glucosyltransferase  , partial (16%)
          Length = 558

 Score = 25.0 bits (53), Expect = 5.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 65  GCCCCHNML 73
           GCCCCH+ L
Sbjct: 194 GCCCCHHHL 168


>TC18085 
          Length = 551

 Score = 24.6 bits (52), Expect = 7.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 65  GCCCCHNM 72
           GCCCCH +
Sbjct: 308 GCCCCHGL 285


>CB828560 
          Length = 453

 Score = 24.6 bits (52), Expect = 7.8
 Identities = 9/21 (42%), Positives = 12/21 (56%)
 Frame = +3

Query: 26  YIKCAMDCPSTRLV*TQHQCS 46
           +  C   C STRL+  +H CS
Sbjct: 300 WFDCLFHCQSTRLLAQEHACS 362


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.367    0.166    0.684 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,281,690
Number of Sequences: 28460
Number of extensions: 47739
Number of successful extensions: 1994
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of query: 155
length of database: 4,897,600
effective HSP length: 83
effective length of query: 72
effective length of database: 2,535,420
effective search space: 182550240
effective search space used: 182550240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 51 (24.3 bits)