BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.1 + phase: 0 /pseudo
(1265 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot... 32 0.63
TC15938 similar to UP|O81340 (O81340) 26S proteasome regulatory ... 32 0.82
TC11448 28 1.3
BP036183 31 1.4
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 31 1.4
TC9383 similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), parti... 30 1.8
BP033820 30 3.1
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 30 3.1
CB827605 30 3.1
AV766515 30 3.1
CB827522 29 4.1
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 29 4.1
TC14939 similar to UP|R19A_ARATH (Q9SRX2) 60S ribosomal protein ... 29 4.1
TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%) 29 5.3
TC8259 similar to UP|HMGL_SOYBN (P26585) HMG1/2-like protein (SB... 29 5.3
TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%) 29 5.3
AV407229 28 6.9
TC8474 weakly similar to UP|Q9LN91 (Q9LN91) T12C24.2, partial (8%) 28 9.1
TC15443 28 9.1
TC13029 similar to UP|Q9LFL9 (Q9LFL9) 1-D-deoxyxylulose 5-phosph... 28 9.1
>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
Length = 1794
Score = 32.0 bits (71), Expect = 0.63
Identities = 30/112 (26%), Positives = 46/112 (40%)
Frame = -1
Query: 674 YASHVMLLFRKTPCSPLFLHFIILLALNHFISLIPQLSCFQVLMRITLMGSIFVHPHLLL 733
+A H LFR PLFL F SC ++++ ++ L L
Sbjct: 1761 FAWHFS*LFRLCMLFPLFLLF----------------SCIVPILQLNILSRFLP---LFL 1639
Query: 734 LNLFRMLILYLQLVIPPE*VIHPLILMITIVILLLKFFMSLLLIEKRVLTPF 785
L LF + + I + IL+ + LLL FF+ LL I +R++ F
Sbjct: 1638 LFLFHNFFFLITIFISQQ----RHILLFIFLFLLLLFFLFLLFISRRLMCIF 1495
>TC15938 similar to UP|O81340 (O81340) 26S proteasome regulatory subunit
S5A, partial (56%)
Length = 768
Score = 31.6 bits (70), Expect = 0.82
Identities = 21/72 (29%), Positives = 36/72 (49%)
Frame = -2
Query: 167 SHTRNRIIIHVRIAIVLVMYLLIVLL*RVGTVTVLAILLKIVPRDLQNKIVALPNPRMFQ 226
SH III+ + ++ L +V ++ V AIL ++ P LQ+ ++ L
Sbjct: 593 SHAAGIIIINGCKECIQLLCLSLVFFTKIDNVKCNAILFQLSPNHLQHFLLVLDRTPSKD 414
Query: 227 SLDLLLSLLLPL 238
+ LLL L+LP+
Sbjct: 413 NNPLLLFLILPM 378
>TC11448
Length = 590
Score = 28.5 bits (62), Expect(2) = 1.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 674 YASHVMLLFRKTPCSPLFLHFIILLALNHFISLIPQLSCF 713
++S +L RKT C L H+++L+ ++ F S Q+ F
Sbjct: 417 FSSFFWILVRKTLCHLL*YHYLVLMGISFFPSFSIQIQKF 536
Score = 20.8 bits (42), Expect(2) = 1.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 615 NCLVSLLNIPFLNLLDMLVLFSCSL 639
+CL L +P +L + L CSL
Sbjct: 308 HCLFDLCCLPPFSLFSLKALLFCSL 382
>BP036183
Length = 552
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 1041 KMSPCIDNLLVVLFT*LLLTLIFHMLSIKSVNLWPLLGHLISL 1083
KM C LL+ T LL F S++ +WPLLG L L
Sbjct: 290 KMETCTAILLLTAITVYLLWFTFISRSLRGPRVWPLLGSLPGL 418
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = -2
Query: 432 LLIVYIANLANSWLYPLIVLFLFQIVLLI*SIQTFGGLLLFLQ*MAFVIL-YCLLTIFLV 490
L + +++ S L L++LFL ++V + *+I +LLFL +F+++ C TI LV
Sbjct: 291 LSVTNFSSIILSILVFLLLLFLLRLV*IW*TIFNLYLVLLFLLLFSFLLI*RCHFTILLV 112
Query: 491 LHGYIF*KIALNYHKFIFLLLVWLKHNFLVLLR 523
L ++ L + ++ V+ NF L R
Sbjct: 111 LLLFLLLLFLLTLNLHLYFPFVYNHINFHFLSR 13
>TC9383 similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial (23%)
Length = 1099
Score = 30.4 bits (67), Expect = 1.8
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = -3
Query: 159 MLLLQLLDSHTRNRIIIHVRIAIVLVMYL---LIVLL*RVGTV--TVLAILLKIVPRDLQ 213
+LLL + SH + R++ H + + L L VL + T+ +L +LL + L
Sbjct: 635 LLLLSVTTSHLK-RVLPHASSIVTFTLDLSSPLDVLRRQCHTLQLALLPLLLLLFRHYLG 459
Query: 214 NKIVALPNPRMFQSLDLLLSLLLPLRVRLP 243
N +V P + +SLDL +LP+ LP
Sbjct: 458 NPLVLPVKPILLRSLDLRRPRVLPISAALP 369
>BP033820
Length = 537
Score = 29.6 bits (65), Expect = 3.1
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = -3
Query: 689 PLFLHFIILLALNHFISLIPQLSCFQVLMRITLMGSIFVHPHLLLLNLFRMLILYLQLVI 748
P+F+ F+I LN F L +++ ITLM HPH L L L L+ + L I
Sbjct: 400 PIFVLFVIRTPLNFF-----SLEVLVMMVFITLMD----HPHKLCLTLLLKLLCFSLLCI 248
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 29.6 bits (65), Expect = 3.1
Identities = 24/62 (38%), Positives = 28/62 (44%)
Frame = -1
Query: 210 RDLQNKIVALPNPRMFQSLDLLLSLLLPLRVRLPLL*VTLKL*SNRLYLPTPLLPCLLLT 269
R+ + LP P LLL LLL L LPL L LP PLLP LLL
Sbjct: 358 REASGSVHRLPPPLPLPLPLLLLLLLLLLHPPLPL---------PPLLLPPPLLPLLLLR 206
Query: 270 VI 271
++
Sbjct: 205 LL 200
>CB827605
Length = 503
Score = 29.6 bits (65), Expect = 3.1
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 692 LHFIILLALNHFISLIPQLSCFQVLMRITLMGSIFVHPHLLLLNLFRMLILYLQ 745
LHF+++LA HF+ + +SC L+ I ++ HPHLLLL + M +LYL+
Sbjct: 88 LHFLLVLA-GHFL-FM*IISCL-ALLAI*SKSNLKHHPHLLLL-VISMDLLYLR 237
>AV766515
Length = 572
Score = 29.6 bits (65), Expect = 3.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 711 SCFQVLMRITLMGSIFVHPHLLLLNLFRMLILYL 744
+CF +L + +G + +H L +LNL MLIL +
Sbjct: 329 TCFGMLFILVRLGMLLLHRELTVLNLHLMLILLI 228
>CB827522
Length = 519
Score = 29.3 bits (64), Expect = 4.1
Identities = 22/66 (33%), Positives = 33/66 (49%)
Frame = +3
Query: 331 TFLT*HLILFLLVNCVNKD*MFIFQHLVFRYRIHRRSRSLGWVAGWVGYLSSNLSTFLKI 390
TF T L L LL NK+ +F+ + R R S+ W + LS++L+T+L
Sbjct: 18 TFYTATLTLTLLTQTENKEPIFLSPNSPIGKRCCTRIGSMSWASPDDVLLSTSLATYLDK 197
Query: 391 ISLLLL 396
L+LL
Sbjct: 198 KLLVLL 215
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 29.3 bits (64), Expect = 4.1
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -2
Query: 689 PLFLHFIILLALNHFISLIPQLSCFQ-VLMRITLMGSIFVHPHLLLLNLFRMLI 741
P+F FI+LL + H P S + +L+ I L+ +F+HP + LLN +L+
Sbjct: 449 PIFFFFILLLRVLH---TRPSASGMRRLLLFILLIFFLFLHPLVQLLNQLELLL 297
>TC14939 similar to UP|R19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1,
partial (94%)
Length = 952
Score = 29.3 bits (64), Expect = 4.1
Identities = 24/68 (35%), Positives = 34/68 (49%), Gaps = 5/68 (7%)
Frame = -1
Query: 430 LSLLIVYIANLANSWLYPLIVLFLFQIVLLI*SIQTFGGLLLFLQ*MAFVILY-----CL 484
LSLL ++ A LA++W + L + L I SI+T LLFL + F +Y CL
Sbjct: 550 LSLLALFFALLASNWSDKVFSLAFSALDL*ILSIRT----LLFLNTLPFTFMYISWYMCL 383
Query: 485 LTIFLVLH 492
F L+
Sbjct: 382 SIFFASLY 359
>TC16026 similar to UP|Q9SGZ3 (Q9SGZ3) F28K19.29, partial (32%)
Length = 1183
Score = 28.9 bits (63), Expect = 5.3
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +3
Query: 211 DLQNKIVALPNPRMFQSLDLLLSLLLPLRVRLPLL*VTLKL*SNRLYLPTPLLPCLLLTV 270
+L +K++ P P+ SL LLL LLL L + L L ++++L LLP + T+
Sbjct: 585 NLLSKVLPQPQPQPQPSLLLLLLLLLLLLLPLHL---------HQIHLYPVLLPLIPSTL 737
Query: 271 ILVGFLILRVV 281
+L+ L ++V
Sbjct: 738 LLLSLLSSQMV 770
>TC8259 similar to UP|HMGL_SOYBN (P26585) HMG1/2-like protein (SB11
protein), partial (92%)
Length = 942
Score = 28.9 bits (63), Expect = 5.3
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -3
Query: 265 CLLLTVILVGFLILRVVII*RLILNHCLLRHLFLLCHQST 304
CLL+ +ILV +I+ ++II L H LLR LF +C T
Sbjct: 637 CLLVIIILVAVIIVFILII---HLRH*LLR-LFFICSSRT 530
>TC10129 weakly similar to UP|Q7T9Y7 (Q7T9Y7) Odv-e66, partial (10%)
Length = 562
Score = 28.9 bits (63), Expect = 5.3
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
Frame = +2
Query: 230 LLLSLLLPLRVRLPLL*VTLKL*SNRLYLPTPLLPCLLLTVILVGFLILRVVII*RLILN 289
LLL LLPL + L + +LP PLL L ++L+ FL+LR ++ +IL+
Sbjct: 32 LLLQKLLPLAINLHI----------HQFLPKPLL----LAIVLLMFLLLRKLLPQTIILH 169
Query: 290 ------------------HCLLRHL--FLLCHQSTQLVAI 309
H LL+ L FL H S L A+
Sbjct: 170 IPQHLQKLLPQHLNHLTFHYLLKPLLQFLNLHMSQHLQAL 289
>AV407229
Length = 452
Score = 28.5 bits (62), Expect = 6.9
Identities = 26/93 (27%), Positives = 45/93 (47%)
Frame = +2
Query: 685 TPCSPLFLHFIILLALNHFISLIPQLSCFQVLMRITLMGSIFVHPHLLLLNLFRMLILYL 744
T S L H +IL F ++ L FQ L + L+ +H HL + + R L+ +
Sbjct: 74 TIASELGCHLLILTRSFPFHRILRSL--FQGLKWVVLL---LLHLHLRIRDHSRNLLRFS 238
Query: 745 QLVIPPE*VIHPLILMITIVILLLKFFMSLLLI 777
L++ PL++++ VI L ++LLL+
Sbjct: 239 TLIL------FPLLVLLRFVIRLRPLCLTLLLV 319
>TC8474 weakly similar to UP|Q9LN91 (Q9LN91) T12C24.2, partial (8%)
Length = 564
Score = 28.1 bits (61), Expect = 9.1
Identities = 10/15 (66%), Positives = 11/15 (72%)
Frame = +3
Query: 502 NYHKFIFLLLVWLKH 516
N+H F FLL VWL H
Sbjct: 408 NFHSFSFLLCVWLSH 452
>TC15443
Length = 745
Score = 28.1 bits (61), Expect = 9.1
Identities = 23/70 (32%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Frame = -2
Query: 1038 LLLKMSPCIDNLLVVLFT*LLLTL---IFHMLSIKSVNLWPLLGHLISLQFFVLSAMLKV 1094
LLLK++ L +L T L L+L ++ L +K W L GH SL F +S +L++
Sbjct: 669 LLLKLNWLSFFSLELLPTKLFLSLETFLYLFLQLKFSQPWKLEGHFDSLDF--VSWLLRL 496
Query: 1095 LFFMVYASLL 1104
L+ ++ L+
Sbjct: 495 LYLIMLLQLM 466
>TC13029 similar to UP|Q9LFL9 (Q9LFL9) 1-D-deoxyxylulose 5-phosphate
synthase-like protein, partial (13%)
Length = 504
Score = 28.1 bits (61), Expect = 9.1
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 1216 VTLYAIMLLMAPYN*FSFLLKNNLLISSPKHIIWHASKI 1254
V L A+ +L +P +FL KN +S KHI W AS++
Sbjct: 362 VNLTALCILDSPMQLSNFLEKNMKRVSQ-KHINWRASRV 249
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.351 0.158 0.516
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,335,881
Number of Sequences: 28460
Number of extensions: 422943
Number of successful extensions: 4804
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4788
length of query: 1265
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1164
effective length of database: 2,023,140
effective search space: 2354934960
effective search space used: 2354934960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147537.1