BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147536.6 + phase: 0
(281 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP033057 97 3e-21
AV425247 31 0.27
BP047230 28 1.7
TC10561 28 2.3
CB828237 27 3.0
TC12828 similar to UP|Q84UD2 (Q84UD2) GAMYB-binding protein (Fra... 27 3.0
TC11160 similar to UP|Q7XA51 (Q7XA51) Monosaccharide transporter... 27 3.0
TC18572 similar to GB|AAP21194.1|30102552|BT006386 At1g22270 {Ar... 27 3.9
TC12965 weakly similar to GB|AAP49518.1|31376383|BT008756 At3g62... 27 3.9
AV418250 27 5.1
AV415978 27 5.1
TC12274 similar to PIR|G88642|G88642 protein C54E4.4 [imported] ... 27 5.1
BP085146 27 5.1
TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodula... 26 6.6
TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear phospho... 26 6.6
BG662353 26 6.6
TC19015 homologue to UP|Q94EH1 (Q94EH1) At2g20120/T2G17.8, parti... 26 8.7
TC13934 homologue to UP|Q94AF3 (Q94AF3) AT4g28740/F16A16_150, pa... 26 8.7
>BP033057
Length = 460
Score = 97.1 bits (240), Expect = 3e-21
Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
Frame = -3
Query: 137 KEDLESEDGKCGKDSRGRSLGDLLDVETPYLTPIASPHFFTPMNCS-PYCSPYNQH-GFN 194
+EDLESED K SR RSL D ++P+LTP+AS +P+ CS + YNQH GFN
Sbjct: 458 EEDLESEDISI-KGSRTRSLSDF---DSPFLTPMAS----SPLKCSLDHIDSYNQHQGFN 303
Query: 195 PLFESTTDAEFNRLKSSPPPKFKFLQEAEEKLRRKMQDD 233
PLFES+ ++EFNR +SSPPPK KFL+EAE+KL RK+ ++
Sbjct: 302 PLFESSAESEFNRFRSSPPPKLKFLREAEDKLYRKLIEE 186
>AV425247
Length = 417
Score = 30.8 bits (68), Expect = 0.27
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +1
Query: 164 TPYLTPIASPHFFTPMNCSPYCSPYNQHGFN----PLFESTTDAEF--NRLKSSPPP 214
TP P+ +PH+ P+ + + QH + P+F ++ F +R SPPP
Sbjct: 187 TPIFAPLLNPHYLLPLPLPHHPFSFPQHSPSPHPLPIFSLSSSTHFPTHRFPFSPPP 357
>BP047230
Length = 510
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 151 SRGRSLGDLLDVETPYLTPIASPHFFTPMNCSPYCSP 187
++G ++G+ + TPY I S F+P N P+ SP
Sbjct: 58 AQGSTIGNTPESMTPYQRDILSLT*FSPTNMPPFSSP 168
>TC10561
Length = 622
Score = 27.7 bits (60), Expect = 2.3
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 260 NHHQC-HLQQYHSSTSQVLPLA 280
NHHQ HLQ +H +T + LPL+
Sbjct: 223 NHHQM*HLQHHHLTTQENLPLS 158
>CB828237
Length = 533
Score = 27.3 bits (59), Expect = 3.0
Identities = 15/42 (35%), Positives = 19/42 (44%)
Frame = -3
Query: 173 PHFFTPMNCSPYCSPYNQHGFNPLFESTTDAEFNRLKSSPPP 214
PH +P N S S N H N +TT +R + PPP
Sbjct: 306 PHLSSPSNSSSPISHTNHHASNLNTTATTFNLSHRSQPQPPP 181
>TC12828 similar to UP|Q84UD2 (Q84UD2) GAMYB-binding protein (Fragment),
partial (29%)
Length = 830
Score = 27.3 bits (59), Expect = 3.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 17 CLLLALVAEVYYLLWWKKKI 36
CL L L E YY WW K +
Sbjct: 503 CLFLMLSVEYYYSQWWHKLV 562
>TC11160 similar to UP|Q7XA51 (Q7XA51) Monosaccharide transporter, partial
(16%)
Length = 538
Score = 27.3 bits (59), Expect = 3.0
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 18/68 (26%)
Frame = +1
Query: 1 MKSLSSVGLGLSIVFGCLLLALVAEVYYLL------------------WWKKKIIKREIE 42
+ SL ++ G+ ++FG L++ + +++LL W+ KKI++ +
Sbjct: 94 LMSLCNLKYGIFLLFGGLIVVMSCFIFFLLPETKQVPIEEIYLLFENHWFWKKIVRANQD 273
Query: 43 NDYGNGNP 50
+ NG P
Sbjct: 274 FEASNGKP 297
>TC18572 similar to GB|AAP21194.1|30102552|BT006386 At1g22270 {Arabidopsis
thaliana;}, partial (79%)
Length = 606
Score = 26.9 bits (58), Expect = 3.9
Identities = 17/57 (29%), Positives = 32/57 (55%), Gaps = 2/57 (3%)
Frame = +3
Query: 35 KIIKREIENDYGNGNPLKELFYMFCWKRPSTSLRQTGFT--PPELCSSMRINDNFVH 89
K++++ +E NG+ LK++F WK + + G+T P E SSM ++ F++
Sbjct: 45 KVVEKTVEM---NGDFLKKMFDKIDWKAFVVASQAMGYTELPEEADSSMLDSNEFLN 206
>TC12965 weakly similar to GB|AAP49518.1|31376383|BT008756 At3g62130
{Arabidopsis thaliana;}, partial (18%)
Length = 471
Score = 26.9 bits (58), Expect = 3.9
Identities = 17/45 (37%), Positives = 20/45 (43%), Gaps = 2/45 (4%)
Frame = +2
Query: 172 SPHFFTPMNCSPYC--SPYNQHGFNPLFESTTDAEFNRLKSSPPP 214
S H + P SP +P + PL ESTT A SPPP
Sbjct: 194 SSHLYPPPPSSPLLRFNPNSPTTIPPLLESTTAASAAAPPPSPPP 328
>AV418250
Length = 420
Score = 26.6 bits (57), Expect = 5.1
Identities = 10/26 (38%), Positives = 13/26 (49%)
Frame = +1
Query: 162 VETPYLTPIASPHFFTPMNCSPYCSP 187
+ P P+ P F P N +P CSP
Sbjct: 166 ISEPKSNPLPFPPTFAPKNSTPRCSP 243
>AV415978
Length = 136
Score = 26.6 bits (57), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 59 CWKRPSTSLRQTGFTPPELCSSMRIND 85
CW+ +T L Q GF PP + I D
Sbjct: 119 CWRCRATVLLQVGFRPPWWWDELTIKD 39
>TC12274 similar to PIR|G88642|G88642 protein C54E4.4 [imported] -
Caenorhabditis elegans {Caenorhabditis elegans;} ,
partial (11%)
Length = 589
Score = 26.6 bits (57), Expect = 5.1
Identities = 14/49 (28%), Positives = 27/49 (54%), Gaps = 4/49 (8%)
Frame = -2
Query: 235 KGINGNEVDNSLITIIVDKKYE----REVNHHQCHLQQYHSSTSQVLPL 279
+G++ E SL T+ ++KK + +++ HHQ YH S ++P+
Sbjct: 216 QGLHTVEYQYSLETLKIEKKIKN*LKQKIKHHQWTAFLYHLENSFLVPM 70
>BP085146
Length = 304
Score = 26.6 bits (57), Expect = 5.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 1 MKSLSSVGLGLSIVFGCLLLALVAEVYYLLWW 32
++ LS GL S+VFG LL+ V +++ LW+
Sbjct: 235 LRLLSFQGLW-SVVFGLLLVMAVCSLFWFLWF 143
>TC16203 UP|Q8GRU6 (Q8GRU6) LRR receptor-like kinase (Hypernodulation aberrant
root formation protein), complete
Length = 3308
Score = 26.2 bits (56), Expect = 6.6
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Frame = +2
Query: 70 TGFTPPELCSSMR-----INDNFVHDP 91
TG PP+LC S R I DNF P
Sbjct: 1238 TGLIPPDLCKSGRLKTFIITDNFFRGP 1318
>TC10643 similar to UP|BAC84847 (BAC84847) Acidic nuclear
phosphoprotein-like protein, partial (5%)
Length = 789
Score = 26.2 bits (56), Expect = 6.6
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = +2
Query: 217 KFLQEAEEKLRRKMQDDNKGINGNEVDNSLITIIVDKKYEREVNHHQCHLQQYHSST 273
+F + E ++ R ++ K NE ++ II K+ E HQ QQ HSST
Sbjct: 398 RFSSKKEREMERAKLENEKRRLENE---RMVLIIHQKELELMNLQHQQQQQQQHSST 559
>BG662353
Length = 409
Score = 26.2 bits (56), Expect = 6.6
Identities = 9/24 (37%), Positives = 18/24 (74%)
Frame = +1
Query: 219 LQEAEEKLRRKMQDDNKGINGNEV 242
L E E+LR +++ +KG++GN++
Sbjct: 49 LNEKIERLREEVKSSSKGVSGNKI 120
>TC19015 homologue to UP|Q94EH1 (Q94EH1) At2g20120/T2G17.8, partial (25%)
Length = 414
Score = 25.8 bits (55), Expect = 8.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 16 GCLLLALVAEVYYLLWW 32
GC++L +A +Y+ WW
Sbjct: 285 GCVILLPIAITFYITWW 335
>TC13934 homologue to UP|Q94AF3 (Q94AF3) AT4g28740/F16A16_150, partial (16%)
Length = 406
Score = 25.8 bits (55), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 246 LITIIVDKKYEREVNHHQCH 265
L+ +I +K+ +E N H CH
Sbjct: 126 LLVVIEQRKHSKEDNQHHCH 67
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,099,673
Number of Sequences: 28460
Number of extensions: 93540
Number of successful extensions: 577
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of query: 281
length of database: 4,897,600
effective HSP length: 89
effective length of query: 192
effective length of database: 2,364,660
effective search space: 454014720
effective search space used: 454014720
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC147536.6