TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147536.4 + phase: 0 /pseudo
         (805 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                                76  2e-14
TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)             37  0.009
AU089601                                                               31  0.88
BP065135                                                               29  2.6
AV766883                                                               28  7.5
BP034811                                                               28  7.5
TC10198                                                                28  7.5

>TC18710 
          Length = 843

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 37/83 (44%), Positives = 51/83 (60%)
 Frame = +2

Query: 13  IQIDLEKAYDRLNWNFVEECLMECKFPSKLIKIIHHCISTLSYKIMWNGDKTETFYPSRG 72
           I++D+ KAYDR+ W F+E  L+   F +  +K+I   +S +SY    NG       P RG
Sbjct: 566 IKLDMNKAYDRVEWKFLESSLLAFGFSTNWVKMIMILVSGVSYNYKINGVVGPKLLPQRG 745

Query: 73  IRQGDPLSPYLFVICMERLSHII 95
           +RQGDP SPYLF+  ME LS +I
Sbjct: 746 LRQGDPFSPYLFLFTMEVLSLLI 814


>TC18742 similar to UP|Q9FZG5 (Q9FZG5) T2E6.4, partial (3%)
          Length = 912

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 22/75 (29%), Positives = 38/75 (50%)
 Frame = -3

Query: 116 ISHLLFADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDI 175
           ISHL FAD+L++F+   +E    + + L +F   SG   N  K++V+            +
Sbjct: 373 ISHLCFADNLMVFSNGYLESIAIINNVLHIFQHLSGLTPNPAKSEVFI-----------L 227

Query: 176 IQHTGFNQVNNLGKY 190
           ++ T  NQ+ N+  Y
Sbjct: 226 VKETTKNQITNMLGY 182


>AU089601 
          Length = 399

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
 Frame = +1

Query: 46  IHHCISTLSYKIMW--------NGDKTETFYPSRGIRQGDPLSPYLFVIC 87
           I HC+S+L + ++W        N  K +TFY   G +    ++ Y F+IC
Sbjct: 172 IFHCLSSL*FSLVWITTTPPQSNQPKVQTFYTEIGTK----IAKYSFMIC 309


>BP065135 
          Length = 492

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/37 (32%), Positives = 19/37 (50%)
 Frame = +2

Query: 48  HCISTLSYKIMWNGDKTETFYPSRGIRQGDPLSPYLF 84
           HC S+++  I W G+K  T      + Q + L P+ F
Sbjct: 164 HCKSSVASGIFWQGNKARTLVDVELMEQPEQLKPFSF 274


>AV766883 
          Length = 290

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 170 HLREDIIQHTGFNQVNNLGK----YLGANIAPGRTSRGHFNHIINKIQNKLS 217
           H+R+  + HT  + + ++GK    +L  ++    T   H+N ++ +I NK++
Sbjct: 49  HIRD--VVHTNLDWIQDVGKILS*FLTYDLRGSHTHTVHYNPVLTRIPNKIT 198


>BP034811 
          Length = 578

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 48  HCISTLSYKIMWNGDKTETFYPSRGIRQGDPLSPYLFVICMERLSHII 95
           HC ST+S       D T +  PS+ ++  +    Y+     E  +HI+
Sbjct: 246 HCSSTMSNSSSGEDDNTTSERPSKTLKMSNASPSYILSFSNENPAHIL 389


>TC10198 
          Length = 644

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 28  FVEECLMECKFPS-----KLIKIIHHCISTLSYKIMWNG 61
           F+  C   CKFPS      L+ ++HH +S L + + + G
Sbjct: 401 FLFYCFKTCKFPSFSCLLYLVVMVHHVVSQLGWIVHFLG 517


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.363    0.164    0.635 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,441,303
Number of Sequences: 28460
Number of extensions: 245109
Number of successful extensions: 2296
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 1787
length of query: 805
length of database: 4,897,600
effective HSP length: 98
effective length of query: 707
effective length of database: 2,108,520
effective search space: 1490723640
effective search space used: 1490723640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 59 (27.3 bits)