BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147517.6 + phase: 0 /pseudo
(1055 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9902 similar to UP|BAD07483 (BAD07483) PDR-type ABC transporte... 188 2e-69
BP055095 253 1e-67
AV408313 169 3e-42
AV406931 160 1e-39
BP057421 130 1e-30
TC11137 similar to GB|CAD59563.1|27368811|OSA535041 PDR-like ABC... 118 2e-28
AV771159 69 3e-15
AV416268 69 4e-12
TC18438 similar to UP|Q8GU88 (Q8GU88) PDR-like ABC transporter, ... 65 6e-11
BP075566 41 1e-09
TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proeti... 44 1e-04
AW720269 43 3e-04
CB827630 41 0.001
BG662257 40 0.001
TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transpor... 40 0.001
CB828965 40 0.003
BP046200 38 0.010
TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog,... 34 0.11
AV778293 33 0.31
CB829290 32 0.40
>TC9902 similar to UP|BAD07483 (BAD07483) PDR-type ABC transporter 1,
partial (19%)
Length = 1207
Score = 188 bits (478), Expect(2) = 2e-69
Identities = 84/129 (65%), Positives = 105/129 (81%)
Frame = +1
Query: 798 KNSELYRINKALVKELSAPAPCSKDLYFPSQYSRSFFTQCMACLWKQHWSYWRNPEYNAI 857
KNS+L+R NK L++EL PAP SKDLYF +Q+S+ F QC ACLWKQ WSYWRNP Y A+
Sbjct: 1 KNSDLFRRNKQLIQELGEPAPDSKDLYFATQFSQPFLIQCQACLWKQRWSYWRNPPYTAV 180
Query: 858 RFLYSTAVAVLLGSMFWDLGSKIEKEQDLFNAMGSMYSAVILIGVMNCNSVQPVVAVERT 917
RF ++T +AV+ G++FWDLG K ++ QDL NA+GSMYSAV+ +GV N +SVQPVV+VERT
Sbjct: 181 RFFFTTFIAVMFGTIFWDLGGKHKRRQDLLNAVGSMYSAVLFLGVQNSSSVQPVVSVERT 360
Query: 918 VFYRESAAG 926
VFYRE AAG
Sbjct: 361 VFYREKAAG 387
Score = 92.8 bits (229), Expect(2) = 2e-69
Identities = 49/126 (38%), Positives = 74/126 (57%)
Frame = +3
Query: 927 NVFYFSICLWAGKYPSPICFCTSCGLWHYSVCDDWF*VVYG*SFVVPILLVFHLSLLHLL 986
NVF ++C+ + + I F S +W +S+C D *+ +V +L V H+ +LHLL
Sbjct: 387 NVFCLTLCICSDSSGATIYFLPSRDVWCHSLCHDRI*LDCREILLVFVLHVLHIVVLHLL 566
Query: 987 WDDVSGLDPKQSHFHYSFLSILLNMESLLRIHSPKTKNSSVVEVVQLGKSNGMEFVWIGG 1046
WDD G D K + IL N+E + RI PKTK+SSVVE+V LG S+G++ +W
Sbjct: 567 WDDGCGSDTKSPCCFHCGCCILCNLEPVFRICCPKTKHSSVVEMVLLGMSSGLDHLWTDC 746
Query: 1047 FTIWRF 1052
++WR+
Sbjct: 747 ISVWRY 764
>BP055095
Length = 538
Score = 253 bits (646), Expect = 1e-67
Identities = 122/166 (73%), Positives = 141/166 (84%)
Frame = +3
Query: 8 GQKENLITDYVLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEIS 67
GQ+ L+TDY L+VLGL+ICAD ++G+ M R ISGGQKKR+TTGEMLVGP KALFMDEIS
Sbjct: 6 GQRSQLVTDYALKVLGLDICADVMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEIS 185
Query: 68 TGLDSSTTFQIVNSMRQYVHILKGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREH 127
TGLDSSTTFQI MRQ VHI+ T+VISLLQP PET+ LFDDIILLS+ I+YQGPRE+
Sbjct: 186 TGLDSSTTFQICKFMRQMVHIMDVTMVISLLQPAPETFELFDDIILLSEGQIVYQGPREN 365
Query: 128 VLEFFESIGFKCPNRKGVADFLQEVTSRKDQEQYCEHKDRPYRFIT 173
VLEFFE +GFKCP RKG ADFLQEVTS+KDQEQY KD PYR+++
Sbjct: 366 VLEFFEYMGFKCPERKGAADFLQEVTSKKDQEQYWFRKDEPYRYVS 503
Score = 58.2 bits (139), Expect = 7e-09
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +3
Query: 632 RHQC*NQKVMELVELKPLRNALVGLPGVCGLSMEQRKRLTVAVELVANPSIIFMDEPTSG 691
R Q ++++ L + ++G G+S Q+KR+T LV +FMDE ++G
Sbjct: 12 RSQLVTDYALKVLGLDICADVMIGDEMRRGISGGQKKRVTTGEMLVGPAKALFMDEISTG 191
Query: 692 LDARAAAVVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELLLLKQGGQEIYVGPLGHN 750
LD+ + + +R V T+V ++ QP+ + FE FD+++LL + GQ +Y GP
Sbjct: 192 LDSSTTFQICKFMRQMVHIMDVTMVISLLQPAPETFELFDDIILLSE-GQIVYQGP---- 356
Query: 751 SSNLINHFEGIQGVRKIKDGYNPATWMLEVTTSSKERE 788
N++ FE + + G A L+ TS K++E
Sbjct: 357 RENVLEFFEYMGFKCPERKG---AADFLQEVTSKKDQE 461
>AV408313
Length = 342
Score = 169 bits (427), Expect = 3e-42
Identities = 72/113 (63%), Positives = 91/113 (79%)
Frame = +3
Query: 780 VTTSSKERELGIDFAELYKNSELYRINKALVKELSAPAPCSKDLYFPSQYSRSFFTQCMA 839
VT+S++E +G+DF + YKNSELYR NK L+ EL PAP S DLYFP+QYS+SF QC+A
Sbjct: 3 VTSSAQEVTIGVDFHQTYKNSELYRRNKQLIAELGIPAPGSNDLYFPTQYSQSFLVQCLA 182
Query: 840 CLWKQHWSYWRNPEYNAIRFLYSTAVAVLLGSMFWDLGSKIEKEQDLFNAMGS 892
CLWKQHWSYWRNP Y A+RF ++T +A++ G+MFWDLG K + QDLFNA+GS
Sbjct: 183 CLWKQHWSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGGKYKNRQDLFNALGS 341
>AV406931
Length = 438
Score = 160 bits (404), Expect = 1e-39
Identities = 73/97 (75%), Positives = 85/97 (87%)
Frame = +3
Query: 77 QIVNSMRQYVHILKGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREHVLEFFESIG 136
QIV+S+RQYVHIL GT VISLLQP PETY+LFDDIIL+SD ++Y GPRE+VL+FFES+G
Sbjct: 3 QIVSSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMG 182
Query: 137 FKCPNRKGVADFLQEVTSRKDQEQYCEHKDRPYRFIT 173
FKCP RKG ADFLQEVTS+KDQEQY +D PYRF+T
Sbjct: 183 FKCPERKGAADFLQEVTSKKDQEQYWVRRDEPYRFVT 293
Score = 33.1 bits (74), Expect = 0.23
Identities = 26/116 (22%), Positives = 57/116 (48%), Gaps = 12/116 (10%)
Frame = +3
Query: 713 TVVCTIHQPSIDIFESFDELLLLKQGGQEIYVGPLGHNSSNLINHFEGIQGVRKIKDGYN 772
T V ++ QP+ + ++ FD+++L+ GQ +Y GP + +++ FE + K +
Sbjct: 48 TAVISLLQPAPETYDLFDDIILISD-GQVVYHGPREY----VLDFFESMG--FKCPERKG 206
Query: 773 PATWMLEVTTSSKERELGI------------DFAELYKNSELYRINKALVKELSAP 816
A ++ EVT+ + + + FAE +++ + I + L +E++ P
Sbjct: 207 AADFLQEVTSKKDQEQYWVRRDEPYRFVTVTQFAEAFQS---FHIGRKLAEEVAVP 365
>BP057421
Length = 547
Score = 130 bits (326), Expect = 1e-30
Identities = 61/88 (69%), Positives = 75/88 (84%)
Frame = +3
Query: 1 MKAVATEGQKENLITDYVLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKA 60
MKA A +G + +LITDY L++LGL+IC DT+VG+ M R +SGGQKKR+TTGEM+VGPTK
Sbjct: 276 MKATALKGTESSLITDYTLKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKT 455
Query: 61 LFMDEISTGLDSSTTFQIVNSMRQYVHI 88
LFMDEISTGLDSSTTFQIV ++Q VH+
Sbjct: 456 LFMDEISTGLDSSTTFQIVKCLQQIVHL 539
Score = 33.9 bits (76), Expect = 0.14
Identities = 18/68 (26%), Positives = 38/68 (55%)
Frame = +3
Query: 641 MELVELKPLRNALVGLPGVCGLSMEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAVV 700
++++ L ++ +VG G+S Q+KR+T +V +FMDE ++GLD+ +
Sbjct: 330 LKILGLDICKDTIVGDEMHRGVSGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQI 509
Query: 701 MRTVRNTV 708
++ ++ V
Sbjct: 510 VKCLQQIV 533
>TC11137 similar to GB|CAD59563.1|27368811|OSA535041 PDR-like ABC transporter
{Oryza sativa (japonica cultivar-group);}, partial (15%)
Length = 786
Score = 118 bits (296), Expect(2) = 2e-28
Identities = 72/187 (38%), Positives = 104/187 (55%)
Frame = +3
Query: 866 AVLLGSMFWDLGSKIEKEQDLFNAMGSMYSAVILIGVMNCNSVQPVVAVERTVFYRESAA 925
A+++GS+FW +G E DL +G++Y+AVI +GV NC +VQPVVA+ERTVFYRE AA
Sbjct: 66 AIMVGSVFWKIGKNTESSTDLSMVIGALYAAVIFVGVNNCQTVQPVVAIERTVFYRERAA 245
Query: 926 GNVFYFSICLWAGKYPSPICFCTSCGLWHYSVCDDWF*VVYG*SFVVPILLVFHLSLLHL 985
GNV ++C G + + IC C + L + VC + G +V + + L +LH+
Sbjct: 246 GNVCSSALCHSTGFHRNTICVCPNYVLLTHCVCYGELRLESGQVLLVLLCQLLLLPVLHI 425
Query: 986 LWDDVSGLDPKQSHFHYSFLSILLNMESLLRIHSPKTKNSSVVEVVQLGKSNGMEFVWIG 1045
L D K S+L ++ LL + PKT NS +V +V L M+ VWI
Sbjct: 426 LRYDDRVHHTKSPSGINLCSSVLRTLQPLLWLLYPKT*NSRMVGMVLLDLPCSMDRVWID 605
Query: 1046 GFTIWRF 1052
F I R+
Sbjct: 606 RFPI*RY 626
Score = 25.0 bits (53), Expect(2) = 2e-28
Identities = 7/13 (53%), Positives = 11/13 (83%)
Frame = +1
Query: 849 WRNPEYNAIRFLY 861
WR+P+YN +RF +
Sbjct: 16 WRSPDYNLVRFSF 54
>AV771159
Length = 486
Score = 68.9 bits (167), Expect = 4e-12
Identities = 35/87 (40%), Positives = 55/87 (62%)
Frame = -3
Query: 675 ELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLL 734
+L+ +PS++ +DEPTSGLD+ A ++ T+ GRTVV TIHQPS ++ FD+++L
Sbjct: 343 KLLIHPSLLLLDEPTSGLDSTTALRILNTIPRLATGGRTVVTTIHQPSSRLYYMFDKVVL 164
Query: 735 LKQGGQEIYVGPLGHNSSNLINHFEGI 761
L + G IY GP +S + +F +
Sbjct: 163 LSE-GCPIYYGP----ASTALEYFSSV 98
Score = 62.4 bits (150), Expect(2) = 3e-15
Identities = 36/101 (35%), Positives = 60/101 (58%)
Frame = -3
Query: 52 EMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHILKGTVVISLLQPPPETYNLFDDI 111
++L+ P+ L +DE ++GLDS+T +I+N++ + + TVV ++ QP Y +FD +
Sbjct: 343 KLLIHPS-LLLLDEPTSGLDSTTALRILNTIPRLATGGR-TVVTTIHQPSSRLYYMFDKV 170
Query: 112 ILLSDSHIIYQGPREHVLEFFESIGFKCPNRKGVADFLQEV 152
+LLS+ IY GP LE+F S+GF AD L ++
Sbjct: 169 VLLSEGCPIYYGPASTALEYFSSVGFSTCVTVNPADLLLDL 47
Score = 37.4 bits (85), Expect(2) = 3e-15
Identities = 15/42 (35%), Positives = 27/42 (63%)
Frame = -2
Query: 18 VLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTK 59
V+ LGL C +++G ++R ISG +K+R++ G+ P+K
Sbjct: 449 VITELGLSGCRSSMIGGPLLRGISGAEKRRVSIGQETAHPSK 324
>AV416268
Length = 424
Score = 68.9 bits (167), Expect = 4e-12
Identities = 37/91 (40%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Frame = +3
Query: 651 NALVGLPGVCGLSMEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAVVMRTVR--NTV 708
N +G G G+S Q++R+++ +E++ +P ++F+DEPTSGLD+ A+ V+ + N
Sbjct: 135 NTRIGGWGSKGVSGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVISRISSLNKK 314
Query: 709 D-TGRTVVCTIHQPSIDIFESFDELLLLKQG 738
D RT+V +IHQPS +IF+ F L LL G
Sbjct: 315 DGIQRTIVASIHQPSNEIFQLFHSLCLLSSG 407
Score = 62.0 bits (149), Expect = 5e-10
Identities = 32/108 (29%), Positives = 63/108 (57%), Gaps = 2/108 (1%)
Frame = +3
Query: 16 DYVLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTT 75
D+ ++ +GL+ +T +G + +SGGQK+R++ ++ + LF+DE ++GLDS+ +
Sbjct: 96 DFTIKEMGLQDAINTRIGGWGSKGVSGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAAS 275
Query: 76 FQIVN--SMRQYVHILKGTVVISLLQPPPETYNLFDDIILLSDSHIIY 121
+ +++ S ++ T+V S+ QP E + LF + LLS +Y
Sbjct: 276 YHVISRISSLNKKDGIQRTIVASIHQPSNEIFQLFHSLCLLSSGKTVY 419
>TC18438 similar to UP|Q8GU88 (Q8GU88) PDR-like ABC transporter, partial (8%)
Length = 522
Score = 65.1 bits (157), Expect = 6e-11
Identities = 35/77 (45%), Positives = 45/77 (57%)
Frame = +3
Query: 977 VFHLSLLHLLWDDVSGLDPKQSHFHYSFLSILLNMESLLRIHSPKTKNSSVVEVVQLGKS 1036
V H+ LLHLL D G PK IL N+E L RI P TK+S VVEVV LG S
Sbjct: 6 VLHIVLLHLLRHDDCGCYPKSPCCFNCGRCILCNLEPLFRICRPTTKDSCVVEVVLLGMS 185
Query: 1037 NGMEFVWIGGFTIWRFK 1053
G++++W G +WR++
Sbjct: 186 CGLDYLWDGCVAVWRYR 236
>BP075566
Length = 253
Score = 40.8 bits (94), Expect(2) = 1e-09
Identities = 18/27 (66%), Positives = 23/27 (84%)
Frame = -2
Query: 40 ISGGQKKRLTTGEMLVGPTKALFMDEI 66
+SGGQKKR+TTGEM+VGPT+ L +I
Sbjct: 81 LSGGQKKRVTTGEMIVGPTQHLLWMDI 1
Score = 39.7 bits (91), Expect(2) = 1e-09
Identities = 17/37 (45%), Positives = 26/37 (69%)
Frame = -1
Query: 2 KAVATEGQKENLITDYVLRVLGLEICADTVVGNAMIR 38
+ +G + +LITDY L +LGL+IC DT++G+ M R
Sbjct: 196 RLTXVKGTETSLITDYTLTLLGLDICKDTLLGDDMHR 86
>TC11425 similar to UP|Q9M1Q9 (Q9M1Q9) P-glycoprotein-like proetin, partial
(9%)
Length = 712
Score = 44.3 bits (103), Expect = 1e-04
Identities = 37/123 (30%), Positives = 60/123 (48%)
Frame = +2
Query: 662 LSMEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIHQP 721
LS Q++R+ +A ++ P+I+ +DE TS LDA + VV + + V RT V H+
Sbjct: 107 LSGGQKQRVAIARAIIKTPNILLLDEATSALDAESERVVQDAL-DKVMVNRTTVIVAHR- 280
Query: 722 SIDIFESFDELLLLKQGGQEIYVGPLGHNSSNLINHFEGIQGVRKIKDGYNPATWMLEVT 781
+ ++ D + +LK G + V H + LIN IKDGY + L T
Sbjct: 281 -LSTIKNADVITVLKNG---VIVEKGRHET--LIN----------IKDGYYASLVQLHTT 412
Query: 782 TSS 784
++
Sbjct: 413 ATT 421
Score = 35.8 bits (81), Expect = 0.036
Identities = 27/101 (26%), Positives = 50/101 (48%)
Frame = +2
Query: 29 DTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHI 88
DTVVG +SGGQK+R+ ++ L +DE ++ LD+ + ++V V +
Sbjct: 77 DTVVGERGT-LLSGGQKQRVAIARAIIKTPNILLLDEATSALDAESE-RVVQDALDKVMV 250
Query: 89 LKGTVVISLLQPPPETYNLFDDIILLSDSHIIYQGPREHVL 129
+ TV+++ T D I +L + I+ +G E ++
Sbjct: 251 NRTTVIVA---HRLSTIKNADVITVLKNGVIVEKGRHETLI 364
>AW720269
Length = 524
Score = 42.7 bits (99), Expect = 3e-04
Identities = 20/55 (36%), Positives = 37/55 (66%)
Frame = +3
Query: 638 QKVMELVELKPLRNALVGLPGVCGLSMEQRKRLTVAVELVANPSIIFMDEPTSGL 692
+ +M+ + L + ++ VG G+S +RKR+++ V+++ NP I+ +DEPTSGL
Sbjct: 360 ESLMQELGLFHVSDSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGL 524
Score = 37.7 bits (86), Expect = 0.010
Identities = 19/53 (35%), Positives = 34/53 (63%)
Frame = +3
Query: 18 VLRVLGLEICADTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGL 70
+++ LGL +D+ VG+ R ISGG++KR++ G ++ L +DE ++GL
Sbjct: 366 LMQELGLFHVSDSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGL 524
>CB827630
Length = 405
Score = 40.8 bits (94), Expect = 0.001
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 667 RKRLTVAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDTGRTVVCTIH 719
++RL VA+ L+ +P +++MDEP++GLD + + V+ R ++ T H
Sbjct: 152 KRRLIVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVK-LAKRDRAIILTTH 307
Score = 37.4 bits (85), Expect = 0.012
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 41 SGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMR 83
SGG K+RL L+G + ++MDE STGLD ++ + N ++
Sbjct: 140 SGGMKRRLIVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVK 268
>BG662257
Length = 336
Score = 40.4 bits (93), Expect = 0.001
Identities = 23/68 (33%), Positives = 41/68 (59%)
Frame = +1
Query: 29 DTVVGNAMIRAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHI 88
DTVVG+ I+ +SGGQK+R+ +V K L +DE ++ LD+ + ++V V +
Sbjct: 109 DTVVGDRGIQ-LSGGQKQRVAIARAIVKSPKILLLDEATSALDAESE-KVVQDALDRVRV 282
Query: 89 LKGTVVIS 96
+ T+V++
Sbjct: 283 DRTTIVVA 306
Score = 39.7 bits (91), Expect = 0.003
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +1
Query: 651 NALVGLPGVCGLSMEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRNTVDT 710
+ +VG G+ LS Q++R+ +A +V +P I+ +DE TS LDA + VV + + V
Sbjct: 109 DTVVGDRGI-QLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDAL-DRVRV 282
Query: 711 GRTVVCTIHQPS 722
RT + H+ S
Sbjct: 283 DRTTIVVAHRLS 318
>TC15722 similar to UP|Q9FMU0 (Q9FMU0) Similarity to ABC transporter,
partial (37%)
Length = 624
Score = 40.4 bits (93), Expect = 0.001
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Frame = +3
Query: 654 VGLPGVC------GLSMEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 706
VGL G+ LS ++RL +A++LV P ++ +DEP +GLD +A A V++ +++
Sbjct: 27 VGLSGISLDKNPQSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 203
Score = 30.4 bits (67), Expect = 1.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 38 RAISGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHILKGTVVISL 97
+++SGG K+RL LV L +DE GLD +V ++ H+ K V+ +
Sbjct: 63 QSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK---HLKKELTVLVV 233
Query: 98 LQPPPETYNLFD 109
E +L D
Sbjct: 234 SHDLREFASLVD 269
>CB828965
Length = 436
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/34 (52%), Positives = 26/34 (75%)
Frame = +3
Query: 1011 MESLLRIHSPKTKNSSVVEVVQLGKSNGMEFVWI 1044
+E LL I PK NS++VEVV LG S+G++++WI
Sbjct: 6 LEPLLWISYPKNANSNMVEVVLLGISSGLDYLWI 107
>BP046200
Length = 561
Score = 37.7 bits (86), Expect = 0.010
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = -1
Query: 729 FDELLLLKQGGQEIYVGPLGHNSSNLINHFEGIQGVRKIK 768
F +L+LK G++IY+GPLG S+LIN+ E ++ ++ ++
Sbjct: 243 F*TILILKHRGEKIYMGPLGWQCSHLINYLEVMEFLKSLE 124
>TC18135 homologue to UP|Q9MAY4 (Q9MAY4) ABC transporter homolog, partial
(50%)
Length = 968
Score = 34.3 bits (77), Expect = 0.11
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 667 RKRLTVAVELVANPSIIFMDEPTSGLDARAAAVVMRTVRN 706
R R+ +A L NP+I+ +DEPT+ LD A + +++N
Sbjct: 747 RMRIALARALFINPTILLLDEPTNHLDLEACVWLEESLKN 866
>AV778293
Length = 463
Score = 32.7 bits (73), Expect = 0.31
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +2
Query: 817 APCSKDLYFPSQ--YSRSFFTQCMACLWKQHWSYWRNPEYN 855
AP SK L +P+ + S+F + C++ Q + RNP YN
Sbjct: 197 AP*SKSLPYPANRDFDSSYFEHKLECIYSQQEKFQRNPPYN 319
>CB829290
Length = 546
Score = 32.3 bits (72), Expect = 0.40
Identities = 17/54 (31%), Positives = 32/54 (58%)
Frame = -3
Query: 41 SGGQKKRLTTGEMLVGPTKALFMDEISTGLDSSTTFQIVNSMRQYVHILKGTVV 94
S GQ++ + G +L+ +K L +DE + +D++T I ++RQ H + TV+
Sbjct: 496 SMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQ--HFSESTVI 341
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.341 0.149 0.502
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,004,512
Number of Sequences: 28460
Number of extensions: 319726
Number of successful extensions: 3302
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3296
length of query: 1055
length of database: 4,897,600
effective HSP length: 100
effective length of query: 955
effective length of database: 2,051,600
effective search space: 1959278000
effective search space used: 1959278000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC147517.6