TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147517.11 + phase: 0 
         (83 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15619 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Cr...    28  0.30
BP047122                                                               25  1.9
TC18041 weakly similar to UP|O80588 (O80588) At2g44190 protein, ...    25  2.5
AV765173                                                               24  4.3
AV406857                                                               24  4.3
AV780423                                                               24  5.6
TC19885 weakly similar to UP|ZPRO_MOUSE (Q9DA39) Z-protein (0610...    24  5.6
BP042870                                                               23  7.3
TC17906                                                                23  9.6
TC10479 similar to UP|Q8LF96 (Q8LF96) PRL1 protein, partial (20%)      23  9.6
BP069674                                                               23  9.6

>TC15619 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked
          neck) protein-like, partial (26%)
          Length = 822

 Score = 28.1 bits (61), Expect = 0.30
 Identities = 15/59 (25%), Positives = 29/59 (48%), Gaps = 9/59 (15%)
 Frame = +3

Query: 33 YADHEARLGSADKVVEVYERAVQGVTYS---------VDMWLHYCIFAISTYGDPDTVR 82
          Y   E  +G+ ++V +VYERA+  V  +         + +W++Y ++     GD +  R
Sbjct: 21 YIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTR 197



 Score = 26.9 bits (58), Expect = 0.66
 Identities = 11/38 (28%), Positives = 22/38 (56%)
 Frame = +3

Query: 30  WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
           +KKY + E +LG+ D+  ++YE+ ++    +   W  Y
Sbjct: 357 FKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKY 470


>BP047122 
          Length = 543

 Score = 25.4 bits (54), Expect = 1.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 46  VVEVYERAVQGVTYSVDMWLHYCI 69
           +V VYE   + V Y V +WLH+CI
Sbjct: 101 IVVVYED--E*VYYIVRLWLHFCI 36


>TC18041 weakly similar to UP|O80588 (O80588) At2g44190 protein, partial
           (11%)
          Length = 925

 Score = 25.0 bits (53), Expect = 2.5
 Identities = 15/42 (35%), Positives = 21/42 (49%)
 Frame = -2

Query: 2   IFLLKNNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSA 43
           +FLL+   L ++  Y  FL    L +GYWK+       L SA
Sbjct: 453 LFLLRQLSLILK*NY-LFLLPLALIFGYWKQLFPSSLMLSSA 331


>AV765173 
          Length = 565

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 9   ILKMRRVYDAFLAEFPLCYGYWK 31
           +LKM R    FL ++  C G WK
Sbjct: 511 VLKMMRQKSPFLRKWKKCLGDWK 443


>AV406857 
          Length = 303

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 8/30 (26%), Positives = 16/30 (52%)
 Frame = +2

Query: 40  LGSADKVVEVYERAVQGVTYSVDMWLHYCI 69
           LGS+   +++++        S D+WL  C+
Sbjct: 149 LGSSSSAIQIWKDGAHVEQSSTDIWLAVCV 238


>AV780423 
          Length = 502

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 35  DHEARLGSADKVVEVYERAVQGVT 58
           DHE RL S +K   VYE    G T
Sbjct: 126 DHEIRLESQEKT*AVYESF*SGTT 55


>TC19885 weakly similar to UP|ZPRO_MOUSE (Q9DA39) Z-protein (0610007H07Rik),
           partial (9%)
          Length = 501

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 8/28 (28%), Positives = 16/28 (56%)
 Frame = -1

Query: 45  KVVEVYERAVQGVTYSVDMWLHYCIFAI 72
           K+V +Y      V + ++MWL  C++ +
Sbjct: 384 KLVIIYHNITVRVPHWLEMWLSNCLYMV 301


>BP042870 
          Length = 503

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 26 CYGYWKKYADH 36
          CYG WK + DH
Sbjct: 17 CYGAWKDHHDH 49


>TC17906 
          Length = 579

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 6/14 (42%), Positives = 11/14 (77%)
 Frame = -1

Query: 56  GVTYSVDMWLHYCI 69
           G+ + +++WLHY I
Sbjct: 477 GIEFQLNLWLHYII 436


>TC10479 similar to UP|Q8LF96 (Q8LF96) PRL1 protein, partial (20%)
          Length = 559

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 11  KMRRVYDAFLAEFPLCYGYWKKYADHEA 38
           + RR   +     P C+G W  YA H +
Sbjct: 349 RSRRFEGSTERRIPKCFGCWSIYAVHSS 432


>BP069674 
          Length = 513

 Score = 23.1 bits (48), Expect = 9.6
 Identities = 6/18 (33%), Positives = 13/18 (71%)
 Frame = -2

Query: 11  KMRRVYDAFLAEFPLCYG 28
           K++ ++ +F   FP+C+G
Sbjct: 377 KVQAIFKSFKGSFPICHG 324


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.142    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,465,716
Number of Sequences: 28460
Number of extensions: 14289
Number of successful extensions: 121
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of query: 83
length of database: 4,897,600
effective HSP length: 59
effective length of query: 24
effective length of database: 3,218,460
effective search space: 77243040
effective search space used: 77243040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)