TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147496.7 + phase: 0 
         (110 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9634 similar to UP|Q8W0Z3 (Q8W0Z3) At1g29350/F15D2_27, partial...    67  6e-13
TC10166 weakly similar to UP|Q8W0T8 (Q8W0T8) Gb protein, partial...    65  2e-12
CB829050                                                               26  0.86
BP048139                                                               26  0.86
BP039702                                                               25  1.5
TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete             25  1.5
TC12459                                                                25  1.9
AV410869                                                               25  1.9
BP082009                                                               24  3.3
BP067132                                                               24  3.3
BP034613                                                               24  4.3
CB829112                                                               24  4.3
TC15988 similar to PIR|T51353|T51353 NAD ADP-ribosyltransferase ...    24  4.3
BI420244                                                               23  5.6
TC19974 weakly similar to UP|O48721 (O48721) Expressed protein, ...    23  5.6
AU089018                                                               23  7.3
TC18038 similar to GB|CAC04249.1|9886727|PSA297606 PPF-1 protein...    23  7.3
TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO...    23  7.3
TC17570 similar to UP|O48933 (O48933) Histidinol dehydrogenase (...    23  7.3

>TC9634 similar to UP|Q8W0Z3 (Q8W0Z3) At1g29350/F15D2_27, partial (7%)
          Length = 687

 Score = 66.6 bits (161), Expect = 6e-13
 Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
 Frame = -3

Query: 12  GGGGGVKA-VKEVVTTAKNVVAAVKEIV-NCTEQEIYDVLRECDMDPNLAVEKLLSQDTF 69
           G  G  KA +  +   ++ +V ++KEIV N  + EIY  L++C+MDPN AV +LLSQD F
Sbjct: 514 GAAGHNKASLAGIPPASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLLSQDPF 335

Query: 70  REVRSKREKRKE 81
            EV+SKREK+KE
Sbjct: 334 HEVKSKREKKKE 299


>TC10166 weakly similar to UP|Q8W0T8 (Q8W0T8) Gb protein, partial (5%)
          Length = 980

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 32/69 (46%), Positives = 47/69 (67%), Gaps = 1/69 (1%)
 Frame = +3

Query: 14  GGGVKAVKEVVTTAKNVVAAVKEIV-NCTEQEIYDVLRECDMDPNLAVEKLLSQDTFREV 72
           GGG +A   +  + K  +  +KEI  N ++++IY +L+EC MDPN   +KLL QDTF EV
Sbjct: 276 GGGFRA--SIPNSVKKTIQNIKEITGNHSDEDIYAMLKECSMDPNETTQKLLLQDTFHEV 449

Query: 73  RSKREKRKE 81
           + K++KRKE
Sbjct: 450 KRKKDKRKE 476


>CB829050 
          Length = 559

 Score = 26.2 bits (56), Expect = 0.86
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = +1

Query: 2   GSESVVNRNSGGGGGVKAVKEVVTTAKNV 30
           G++SVV+  +GGG     V+EV+    NV
Sbjct: 373 GNQSVVSLEAGGGSRTHQVEEVLEALGNV 459


>BP048139 
          Length = 567

 Score = 26.2 bits (56), Expect = 0.86
 Identities = 14/45 (31%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
 Frame = +3

Query: 63  LLSQDTFREVRSKREKRKEVIL--LRYVNIDMRLNLSLMMNNVCM 105
           L++Q ++++V  K ++RK  I+   RY+   + +N  L  N VC+
Sbjct: 408 LMTQYSWKKVLQKSKQRKRYIIKSFRYIIKKL*INKILRKNKVCI 542


>BP039702 
          Length = 553

 Score = 25.4 bits (54), Expect = 1.5
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 62  KLLSQDTFREVRSKREKRKEVILLRYVNIDMRLNLSLMMNNVCM 105
           +L  +   R V S   +R+  +L  ++++ +  +LSL +  VC+
Sbjct: 132 RLSCRGILRRVLSP*RRRRPALLCLFISLSL*FSLSLFLYRVCL 1


>TC16067 UP|Q9ZRY4 (Q9ZRY4) NDX1 homeobox protein, complete
          Length = 3271

 Score = 25.4 bits (54), Expect = 1.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 29  NVVAAVKEIVNCTEQEIYDVLRECD 53
           ++V+AVKE+     QE+Y +LR+ +
Sbjct: 149 DLVSAVKELHGLNSQELYRLLRDAE 223


>TC12459 
          Length = 797

 Score = 25.0 bits (53), Expect = 1.9
 Identities = 11/43 (25%), Positives = 19/43 (43%)
 Frame = +3

Query: 2   GSESVVNRNSGGGGGVKAVKEVVTTAKNVVAAVKEIVNCTEQE 44
           GS        GGGGG +   EVV   +  +  V+ +   + ++
Sbjct: 108 GSSDEEGEGGGGGGGGEGRTEVVVVDETAIGEVRGVAGVSARQ 236


>AV410869 
          Length = 416

 Score = 25.0 bits (53), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 11  SGGGGGVKAVKEVVTTAKNVVAAVKEIVNCTEQEIYDVLR 50
           +GGGGG K+   ++     V A       C  + +YD++R
Sbjct: 386 TGGGGGFKSATLLIAVGAGVAA-------CQVRALYDLVR 288


>BP082009 
          Length = 110

 Score = 24.3 bits (51), Expect = 3.3
 Identities = 8/16 (50%), Positives = 15/16 (93%)
 Frame = +1

Query: 82 VILLRYVNIDMRLNLS 97
          +IL++++NI+ +LNLS
Sbjct: 52 IILMKFINIEEKLNLS 99


>BP067132 
          Length = 499

 Score = 24.3 bits (51), Expect = 3.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +1

Query: 86  RYVNIDMRLNLSLMMNNVCMYFDFR 110
           + +++   L+LSL +N +C +F+F+
Sbjct: 28  KLLSLSPSLSLSLSLNKLCXWFNFQ 102


>BP034613 
          Length = 524

 Score = 23.9 bits (50), Expect = 4.3
 Identities = 11/30 (36%), Positives = 16/30 (52%)
 Frame = -1

Query: 3   SESVVNRNSGGGGGVKAVKEVVTTAKNVVA 32
           +E  ++  SGGGGG   V E +  A+   A
Sbjct: 191 TEFRISNTSGGGGGANVVPEGLEAAEGARA 102


>CB829112 
          Length = 234

 Score = 23.9 bits (50), Expect = 4.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 2   GSESVVNRNSGGGGGVKAVKEVVTTAKNVVAAVKEIV 38
           G  S   R SGGGGG     E  T A  V    +E+V
Sbjct: 118 GGSSGGGRRSGGGGGASGASE--TNAYEVAR*GEELV 14


>TC15988 similar to PIR|T51353|T51353 NAD ADP-ribosyltransferase  [imported]
           -                Arabidopsis thaliana {Arabidopsis
           thaliana;} , partial (11%)
          Length = 612

 Score = 23.9 bits (50), Expect = 4.3
 Identities = 11/50 (22%), Positives = 28/50 (56%)
 Frame = -1

Query: 61  EKLLSQDTFREVRSKREKRKEVILLRYVNIDMRLNLSLMMNNVCMYFDFR 110
           +KLL      + ++   +   +++  ++  ++ L+LS ++NN+ M  +FR
Sbjct: 375 KKLLRTHKAPKQKTSSFQTSPLVMEPHLQ*ELHLDLSSIINNILMVHEFR 226


>BI420244 
          Length = 571

 Score = 23.5 bits (49), Expect = 5.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 4   ESVVNRNSGGGGGVKAVKE 22
           E V     GGGGGV A +E
Sbjct: 115 EEVEEEEEGGGGGVSAEEE 59


>TC19974 weakly similar to UP|O48721 (O48721) Expressed protein, partial
           (29%)
          Length = 444

 Score = 23.5 bits (49), Expect = 5.6
 Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 5/56 (8%)
 Frame = +2

Query: 19  AVKEVVT-----TAKNVVAAVKEIVNCTEQEIYDVLRECDMDPNLAVEKLLSQDTF 69
           A K VVT      AK + A  K  +NC E  + +  R  D+D    +   LS +TF
Sbjct: 170 APKVVVTRERGKNAKLIAALAKHEINCLELTLIEHTRGPDLD---RLPCALSDNTF 328


>AU089018 
          Length = 512

 Score = 23.1 bits (48), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 11  SGGGGGVKAVKEVVTTAKNV 30
           SGGGGGV  V+ +  T K +
Sbjct: 100 SGGGGGVFTVRRLSFTQKRM 41


>TC18038 similar to GB|CAC04249.1|9886727|PSA297606 PPF-1 protein {Pisum
           sativum;} , partial (20%)
          Length = 586

 Score = 23.1 bits (48), Expect = 7.3
 Identities = 13/42 (30%), Positives = 20/42 (46%)
 Frame = +3

Query: 66  QDTFREVRSKREKRKEVILLRYVNIDMRLNLSLMMNNVCMYF 107
           Q   RE RSKR KRK  +   ++ + +     L ++  C  F
Sbjct: 258 QSFSRERRSKRSKRKRAV*KYHIRLFVAYRGVLYISTDCPIF 383


>TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO1)-like
           protein {Arabidopsis thaliana;} , partial (32%)
          Length = 1142

 Score = 23.1 bits (48), Expect = 7.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 2   GSESVVNRNSGGGGGVKA 19
           GS S      GGGGG+K+
Sbjct: 157 GSTSAGTMGGGGGGGIKS 104


>TC17570 similar to UP|O48933 (O48933) Histidinol dehydrogenase
          (Fragment), partial (51%)
          Length = 811

 Score = 23.1 bits (48), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 12 GGGGGVKAVKEVVTTAKN 29
          GGGGGV+ +KE     ++
Sbjct: 70 GGGGGVEGMKEATVPVRS 17


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.319    0.135    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,352,023
Number of Sequences: 28460
Number of extensions: 11921
Number of successful extensions: 112
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of query: 110
length of database: 4,897,600
effective HSP length: 86
effective length of query: 24
effective length of database: 2,450,040
effective search space: 58800960
effective search space used: 58800960
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)