TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147496.2 - phase: 0 /pseudo
         (550 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP034655                                                               33  0.091
AW720070                                                               32  0.20
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ...    28  3.8
BP039081                                                               28  5.0
TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate p...    28  5.0
TC14821 homologue to UP|AAR12195 (AAR12195) Molecular chaperone ...    28  5.0
TC10820 weakly similar to UP|Q9M9Y0 (Q9M9Y0) F4H5.19 protein, pa...    27  6.6

>BP034655 
          Length = 517

 Score = 33.5 bits (75), Expect = 0.091
 Identities = 19/67 (28%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
 Frame = +2

Query: 459 LSPSEVRDDQKKRKEKYEKEKRKIKRKEREFA*KKK---KRRVSRNSHEQTAPIFTTLQK 515
           +SP ++ D     K K +K+K+K K+K+++   KKK   KR + +   + T P+   +  
Sbjct: 107 ISPPQILDSPTTMKRKKKKKKKKKKKKKKKKKKKKKKKTKRMMKKTKMKTTFPLHRRIGF 286

Query: 516 VALLTNT 522
           +   T T
Sbjct: 287 LPTFTRT 307


>AW720070 
          Length = 484

 Score = 32.3 bits (72), Expect = 0.20
 Identities = 17/58 (29%), Positives = 34/58 (58%)
 Frame = +2

Query: 467 DQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQTAPIFTTLQKVALLTNTQN 524
           ++K++K+K +++K+K  +KE     +KKK++  + +   TAP    L  + LL   Q+
Sbjct: 107 EKKRKKKKKKRKKKKQVKKESSQQQEKKKKKKKKAAVSTTAPFLHPLISLYLLLLPQS 280


>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
           (31%)
          Length = 727

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 465 RDDQKKRKEKYEKEKRKIKRKEREFA*KKKKRR 497
           +  +KK ++K+ ++K++ KRK R    KKKK++
Sbjct: 200 KKSKKK*RKKWRRKKKRRKRKRRVKKKKKKKKK 298


>BP039081 
          Length = 543

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/43 (27%), Positives = 21/43 (47%)
 Frame = +3

Query: 297 VENHEGYVEEEAEEIPSGDLFMIRRFLGNQAKEEESNQRETLF 339
           V NH G+ ++E   +     F   R+ G   KEEE + ++  +
Sbjct: 12  VPNHTGFNKDECGTVDEDGRFCSNRWKGYNEKEEEGSPQDNYY 140


>TC14820 homologue to UP|HS80_LYCES (P36181) Heat shock cognate protein 80,
           partial (53%)
          Length = 1180

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 466 DDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
           +D  + KEK EK+K+KIK    E++   K++ +     E+
Sbjct: 778 EDVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEE 897


>TC14821 homologue to UP|AAR12195 (AAR12195) Molecular chaperone Hsp90-1,
           partial (29%)
          Length = 612

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 466 DDQKKRKEKYEKEKRKIKRKEREFA*KKKKRRVSRNSHEQ 505
           +D  + KEK EK+K+KIK    E++   K++ +     E+
Sbjct: 117 EDVDEEKEKEEKKKKKIKEVSHEWSLVNKQKPIWMRKPEE 236


>TC10820 weakly similar to UP|Q9M9Y0 (Q9M9Y0) F4H5.19 protein, partial (7%)
          Length = 619

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 466 DDQKKRKEKYEKEKRKI--KRKEREFA*KKKKRRVSRNSHEQT 506
           D+ KKRK K E EKRK     K +E    KK+RR  R    +T
Sbjct: 119 DEMKKRKLK-ENEKRKAHEAEKAKEEQLSKKRRREERREKYRT 244


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.160    0.569 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,732,595
Number of Sequences: 28460
Number of extensions: 112593
Number of successful extensions: 1203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 941
length of query: 550
length of database: 4,897,600
effective HSP length: 95
effective length of query: 455
effective length of database: 2,193,900
effective search space: 998224500
effective search space used: 998224500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 58 (26.9 bits)