TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.9 - phase: 0 
         (125 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV767935                                                               27  1.3
BG662282                                                               27  1.3
BP052757                                                               25  5.0
AV779454                                                               24  6.6
TC10716 homologue to UP|PGMP_PEA (Q9SM59) Phosphoglucomutase, ch...    24  8.6

>AV767935 
          Length = 545

 Score = 26.6 bits (57), Expect = 1.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 100 IWYCGWIVTVKEKIYVLRV 118
           I YCG+ + +K+KIY+ ++
Sbjct: 138 IQYCGYFLKMKKKIYIFKI 194


>BG662282 
          Length = 440

 Score = 26.6 bits (57), Expect = 1.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 99  VIWYCGWIVTVKEK 112
           V WYC W++T+K++
Sbjct: 438 VRWYC*WLITIKDR 397


>BP052757 
          Length = 423

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 91  SNPKLVDVVIWYCGWIVTVKEKI 113
           +N +   VV W+CGW    + KI
Sbjct: 191 TNSESSAVVRWWCGWSTIAQSKI 123


>AV779454 
          Length = 420

 Score = 24.3 bits (51), Expect = 6.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 50  ARFKVTSVIGHVFSVDFPGKYQDWAATDPL 79
           A + ++++I    S  FP KY+ W    P+
Sbjct: 154 ACYHISNIIRSFCSQQFPTKYRCWEVNSPI 243


>TC10716 homologue to UP|PGMP_PEA (Q9SM59) Phosphoglucomutase, chloroplast
           precursor  (Glucose phosphomutase) (PGM) , partial (9%)
          Length = 532

 Score = 23.9 bits (50), Expect = 8.6
 Identities = 22/58 (37%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
 Frame = -1

Query: 35  STEVHEFDGKFRKAPARFKVTSVIG--HVFSVDFPGKYQDWAATDPLDLFQAQVIKNE 90
           S  + +FD K  K  A F  T+++   H+ S  F  KYQ    T+ L L  A  IKNE
Sbjct: 445 SFSIKKFD-KTLKRLATFTATTILILLHIDSSFFAHKYQ*LYFTENL*LQNA*KIKNE 275


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,973,546
Number of Sequences: 28460
Number of extensions: 21559
Number of successful extensions: 100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of query: 125
length of database: 4,897,600
effective HSP length: 80
effective length of query: 45
effective length of database: 2,620,800
effective search space: 117936000
effective search space used: 117936000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)