TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.3 - phase: 0 /pseudo
         (526 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9515 similar to UP|O49081 (O49081) Clp-like energy-dependent p...    31  0.44
TC10113 UP|RR11_LOTJA (Q9BBQ3) Chloroplast 30S ribosomal protein...    31  0.57
TC19326 weakly similar to UP|Q9ASX8 (Q9ASX8) At1g27760/T22C5_5, ...    30  0.97
AV778280                                                               29  2.2
BP070193                                                               28  2.8
BP075835                                                               28  4.8

>TC9515 similar to UP|O49081 (O49081) Clp-like energy-dependent protease
           (ATP-dependent Clp protease proteolytic subunit)
           (Endopeptidase Clp) , partial (74%)
          Length = 1158

 Score = 31.2 bits (69), Expect = 0.44
 Identities = 28/94 (29%), Positives = 40/94 (41%), Gaps = 7/94 (7%)
 Frame = -3

Query: 116 PSVCREFVARVSDRVSSGALGWSSRQLHSLHCLGVLLNCEKEDDLHVHIKDVYSLISVLV 175
           PS+C    +R++ R           ++  LH LGVL     + D H+H     SL   L 
Sbjct: 769 PSLCTVAPSRLAVR*KHYTSCQFYGEIAQLHSLGVL---HPQHDPHIHSGVDVSLCGNLA 599

Query: 176 TGLQLPSEEIRGEVLF-------VLYKLFALHST 202
                PS   +GEVL        +LY+ +AL  T
Sbjct: 598 LNSAFPSPHQQGEVLLGLPLLRNILYQPWALSKT 497


>TC10113 UP|RR11_LOTJA (Q9BBQ3) Chloroplast 30S ribosomal protein S11,
           complete
          Length = 879

 Score = 30.8 bits (68), Expect = 0.57
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 419 LDLSKS--IEEAVKQAILACLYVSERNINQILQCFYLLKEAYAYSHDENSTHISKLE 473
           L+LSK   I   + + IL   Y   RNI  I Q FY +K    YS+  N+ +I K+E
Sbjct: 186 LNLSKKNYILYKI*EYILYYKYYRIRNIIYIFQKFYSIKNCILYSYK*NTINIYKIE 356


>TC19326 weakly similar to UP|Q9ASX8 (Q9ASX8) At1g27760/T22C5_5, partial
           (9%)
          Length = 677

 Score = 30.0 bits (66), Expect = 0.97
 Identities = 23/65 (35%), Positives = 32/65 (48%)
 Frame = +2

Query: 22  HRSSLNLQTNQGGTICLVCFSNLISNPSSPTIHVSYALSQLSRSLSIPQFLHSIVTFHPH 81
           H  +LNL  NQ        FS+    PS   + V+Y    +   LS+PQFL   V+ + H
Sbjct: 77  HHLNLNLNLNQTKCCR*SPFSSRFLYPSILLLPVAYFFILVQFRLSLPQFLIR-VSNNAH 253

Query: 82  FLVSP 86
            +VSP
Sbjct: 254 NIVSP 268


>AV778280 
          Length = 555

 Score = 28.9 bits (63), Expect = 2.2
 Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
 Frame = -2

Query: 430 KQAILACLYVSERNINQILQCFY----LLKEAYAYSHDENSTHISKLELRSGILDI 481
           K++  +CL + + +I  IL C Y     L +   YS D+    IS L L+  +L I
Sbjct: 473 KKSGKSCLCIMQCSIGDILTCSYELGVFLCQKLLYSSDKYIMEISCLNLKKSVLSI 306


>BP070193 
          Length = 476

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 9/49 (18%)
 Frame = +2

Query: 47  NPSSPTIHVSYALSQLSRSLSIPQFLH---------SIVTFHPHFLVSP 86
           NPS   +H+S+ L+  + SL+ P  +H         S++T  P F  +P
Sbjct: 134 NPSCHLLHLSHGLAATTTSLASPPHIHGRAATTTSFSLLTSFPSFSTAP 280


>BP075835 
          Length = 379

 Score = 27.7 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 434 LACLYVSERNINQILQCFYLLKEAYAYSHDENSTHISKLE 473
           +A  + S++NI   ++C Y+L   YA+SHD    H +  E
Sbjct: 308 VATFHGSQKNILVRVKC*YILILTYAHSHDWYPCHSNSHE 189


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,824,935
Number of Sequences: 28460
Number of extensions: 146693
Number of successful extensions: 842
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of query: 526
length of database: 4,897,600
effective HSP length: 94
effective length of query: 432
effective length of database: 2,222,360
effective search space: 960059520
effective search space used: 960059520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)