TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.13 + phase: 0 /pseudo
         (575 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18392 homologue to UP|PSA2_ORYSA (Q9LSU2) Proteasome subunit a...    28  3.1
TC9869 similar to UP|O65413 (O65413) Glucose transporter (STP12 ...    28  4.1
BP038264                                                               28  5.3
TC17658 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp prot...    27  6.9
TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcri...    27  6.9
AV769473                                                               27  6.9
TC8502 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase fa...    27  6.9
TC12335 similar to UP|Q9LRM9 (Q9LRM9) Gb|AAD27719.1, partial (10%)     27  9.0

>TC18392 homologue to UP|PSA2_ORYSA (Q9LSU2) Proteasome subunit alpha type 2
            (20S proteasome alpha subunit B) (20S proteasome
           subunit alpha-2) , partial (71%)
          Length = 548

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -3

Query: 263 LCCQYYSVCSFFKRTGFG*P*RGNKHRRNFNICSFASYLCC*KASVVM 310
           LCC Y S+CSF  +       R N  +  FN+   +    C K   V+
Sbjct: 189 LCCNYNSICSFNSKRSLS---RSNSSQSMFNLNKLSRRAKCGKRKRVL 55


>TC9869 similar to UP|O65413 (O65413) Glucose transporter (STP12 protein),
           partial (18%)
          Length = 544

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 20/42 (46%)
 Frame = +3

Query: 293 NICSFASYLCC*KASVVMICADFCILVLPLSRLLLLTAC*NC 334
           +IC  +   CC*    +  C+DF +  LPL    LL  C  C
Sbjct: 51  SICWSSPQCCC*HVVHLRHCSDFPLHALPLEIWTLLLLCWVC 176


>BP038264 
          Length = 592

 Score = 27.7 bits (60), Expect = 5.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 71  ARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVNV 120
           ++IH +S  +LF    IIN + HQ LK  +   +   + I+ N+N  +NV
Sbjct: 503 SQIHFIS--YLFNNTCIINWVMHQ*LKLWKFQAILVTNKIVNNNNFILNV 360


>TC17658 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp protease
           ATP-binding subunit clpA homolog, chloroplast precursor
           , partial (33%)
          Length = 908

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 449 *DLCLTIHAYLAYWRTLLLII*ARKFWFYFEN 480
           *DLCL IH +++   +L  ++ A +F+F   N
Sbjct: 273 *DLCLKIHFFVS*LSSLFKVLVANRFFFLLNN 178


>TC11734 similar to UP|WR49_ARATH (Q9FHR7) Probable WRKY transcription
           factor 49 (WRKY DNA-binding protein 49), partial (28%)
          Length = 1009

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 18/52 (34%), Positives = 26/52 (49%)
 Frame = +2

Query: 212 KTLSTDQSWVAVTMESRKSLRHWHSFLDFTSFHQ*ST*RDFKDHSL*YLYNL 263
           K L   Q W+  T   R+   +  S +DF SFH  S  R  + + L Y+YN+
Sbjct: 755 KPLQQPQQWLLETFMFRRPFSNITSSVDFWSFHLLSY-RWLEFNHLDYIYNV 907


>AV769473 
          Length = 302

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = +3

Query: 68  LLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEGDDMIIGNSNQTVN 119
           +L  RIH +S K L+ +E +I+   +  L  C+N+N E   +++ NS +TVN
Sbjct: 30  ILHERIHPLS-KTLYMKELMISFTIY--LPPCKNSNREFYRLMLINSFRTVN 176


>TC8502 homologue to UP|Q84P31 (Q84P31) Aldehyde dehydrogenase family 7
            member A1  , partial (65%)
          Length = 1415

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = +3

Query: 185  IRTCCFSTATFMSILVLVFNTLSSVHP 211
            ++TCCF  A F   LVL  N++  + P
Sbjct: 1137 LKTCCFYIAQFRGELVLFKNSILKISP 1217


>TC12335 similar to UP|Q9LRM9 (Q9LRM9) Gb|AAD27719.1, partial (10%)
          Length = 398

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (59%)
 Frame = -1

Query: 215 STDQSWVAVTMESRKSLRHWHSFLDFTSFH 244
           +T QSW+A+   + + LR WH+  + +  H
Sbjct: 326 ATTQSWIAINNCNTQLLRQWHTC*ETSESH 237


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.349    0.152    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,918,735
Number of Sequences: 28460
Number of extensions: 189200
Number of successful extensions: 1650
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of query: 575
length of database: 4,897,600
effective HSP length: 95
effective length of query: 480
effective length of database: 2,193,900
effective search space: 1053072000
effective search space used: 1053072000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 58 (26.9 bits)