TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.10 - phase: 0 /pseudo
         (1011 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP040614                                                               97  1e-20
TC13036 similar to UP|Q9LDN0 (Q9LDN0) Phragmoplast-associated ki...    67  2e-11
AV407795                                                               65  4e-11
BP063922                                                               49  5e-06
CB829109                                                               47  1e-05
AV773555                                                               45  4e-05
TC15461 similar to UP|O24147 (O24147) Kinesin-like protein, part...    45  4e-05
BP062438                                                               45  8e-05
TC15187 similar to UP|O24147 (O24147) Kinesin-like protein, part...    40  0.002
AV421105                                                               40  0.002
TC12031 homologue to UP|ATK1_ARATH (Q07970) Kinesin 1 (Kinesin-l...    36  0.035

>BP040614 
          Length = 504

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 64/140 (45%), Positives = 89/140 (62%), Gaps = 3/140 (2%)
 Frame = +1

Query: 1   IYNEQITDLL--DPSQRNLQIREDVK-SGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIG 57
           IYNEQ+ DLL  + S R L IR + + +G+ V +     V+  +DV  L+  G  NR +G
Sbjct: 97  IYNEQVRDLLVSNGSNRRLDIRNNSQLNGLNVPDAYLVPVTCTQDVLYLMEVGQKNRAVG 276

Query: 58  ATSINSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLK 117
           AT++N  SSRSH+V T  V  R +  +  + R     ++LVDLAGSER + + A GERLK
Sbjct: 277 ATALNERSSRSHSVLTVHVRGR-ELVSGSILR---GCLHLVDLAGSERVEKSEAVGERLK 444

Query: 118 EAGNINRSLSQLGNLINILA 137
           EA +INRSLS LG++I+ LA
Sbjct: 445 EAQHINRSLSALGDVISALA 504


>TC13036 similar to UP|Q9LDN0 (Q9LDN0) Phragmoplast-associated
           kinesin-related protein 1, partial (4%)
          Length = 480

 Score = 66.6 bits (161), Expect = 2e-11
 Identities = 43/62 (69%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
 Frame = +3

Query: 916 GYGCRAESCKGLPTN**VEEKT*EGGCIT**ACFRSTFAEEIDTTSL-**CCHAQL***L 974
           GYGCRA SC GL T * V+E+T*EG  +T**A  RSTFAE I TT L **C HA +***L
Sbjct: 3   GYGCRAGSC*GLRTR*QVKEET*EGDYLT**ASGRSTFAEGISTTDL***CGHAHI***L 182

Query: 975 KG 976
           KG
Sbjct: 183 KG 188


>AV407795 
          Length = 424

 Score = 65.5 bits (158), Expect = 4e-11
 Identities = 45/137 (32%), Positives = 70/137 (50%), Gaps = 1/137 (0%)
 Frame = +2

Query: 1   IYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIGATS 60
           IY  ++ DLL+  ++ L IRED K  V +  L E  VS ++ + +L+ +G + R  G T 
Sbjct: 11  IYGGKLFDLLN-DRKKLFIREDGKQQVCIVGLQEYCVSDVESIKELIERGNATRSTGTTG 187

Query: 61  INSESSRSHTVFTCVVESRCKSAADGVSRFKTSRINLVDLAGSERQKSTGAAGERLK-EA 119
            N ESSRSH +    ++ R     +        +++ +DLAGSER   T    ++ + E 
Sbjct: 188 ANEESSRSHAILQLAIK-RSVDGNESKPPRPVGKLSFIDLAGSERGADTTDNDKQTRIEG 364

Query: 120 GNINRSLSQLGNLINIL 136
             IN+SL  L   I  L
Sbjct: 365 AEINKSLLALKECIRAL 415


>BP063922 
          Length = 537

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 39/131 (29%), Positives = 68/131 (51%)
 Frame = +2

Query: 32  LTEEQVSTMKDVTQLLLKGLSNRRIGATSINSESSRSHTVFTCVVESRCKSAADGVSRFK 91
           L +E+V    D + +L     +R      IN     SH + T  +     +   G + + 
Sbjct: 182 LAQEKVDNPLDFSTVLKAAFQSRGNDLLKINV----SHLIVT--IHIFYNNLITGENSY- 340

Query: 92  TSRINLVDLAGSERQKSTGAAGERLKEAGNINRSLSQLGNLINILAEVSQTGKQRHIPYR 151
            S+++LVDLAGSE   +   +GER+ +  ++ +SLS LG++++     S T K+  +PY 
Sbjct: 341 -SKLSLVDLAGSEGSITEDDSGERVTDLLHVMKSLSALGDVLS-----SLTSKKDIVPYE 502

Query: 152 DSRLTFLLQES 162
           +S LT +L +S
Sbjct: 503 NSALTKVLADS 535


>CB829109 
          Length = 514

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 28/77 (36%), Positives = 44/77 (56%)
 Frame = +2

Query: 1   IYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEEQVSTMKDVTQLLLKGLSNRRIGATS 60
           IY  ++ DLL   ++ L +RED +  V +  L E +V  ++ V + + KG + R  G+T 
Sbjct: 200 IYGGKLFDLLS-DRKKLCMREDGRQQVCIVGLQEFEVFDVQIVKEFIEKGNAARSTGSTG 376

Query: 61  INSESSRSHTVFTCVVE 77
            N ESSRSH +   VV+
Sbjct: 377 ANEESSRSHAILQLVVK 427


>AV773555 
          Length = 460

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 25/53 (47%), Positives = 35/53 (65%)
 Frame = -1

Query: 125 SLSQLGNLINILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISP 177
           SLS L ++I  LA+     +  HIP+R S+LT+LLQ +LGG++K  M   ISP
Sbjct: 460 SLSSLSDVIFALAQ-----QDDHIPFRHSKLTYLLQPALGGDSKTVMFVNISP 317


>TC15461 similar to UP|O24147 (O24147) Kinesin-like protein, partial (9%)
          Length = 527

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 21/47 (44%), Positives = 33/47 (69%)
 Frame = +3

Query: 134 NILAEVSQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPAQS 180
           ++++ +S  G+  HIPYR+ +LT L+ +SLGGNAK  M   +SP +S
Sbjct: 6   DVISALSSGGQ--HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPIES 140


>BP062438 
          Length = 498

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 20/35 (57%), Positives = 25/35 (71%)
 Frame = +3

Query: 1   IYNEQITDLLDPSQRNLQIREDVKSGVYVENLTEE 35
           IYNE+I DLL P  R LQI E+++ G+YV  L EE
Sbjct: 393 IYNEEINDLLAPEHRKLQIHENLERGIYVAGLREE 497


>TC15187 similar to UP|O24147 (O24147) Kinesin-like protein, partial (8%)
          Length = 611

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +2

Query: 148 IPYRDSRLTFLLQESLGGNAKLAMVCAISPAQS 180
           IPYR+ +LT L+ +SLGGNA+  M   +SP +S
Sbjct: 2   IPYRNHKLTMLMSDSLGGNAQTLMFVNVSPVES 100


>AV421105 
          Length = 415

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 15/32 (46%), Positives = 25/32 (77%)
 Frame = +2

Query: 148 IPYRDSRLTFLLQESLGGNAKLAMVCAISPAQ 179
           +PYR+S+LT +LQ+SLGG ++  MV  ++P +
Sbjct: 5   VPYRESKLTRILQDSLGGTSRALMVACLNPGE 100


>TC12031 homologue to UP|ATK1_ARATH (Q07970) Kinesin 1 (Kinesin-like protein
           A), partial (7%)
          Length = 740

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +2

Query: 151 RDSRLTFLLQESLGGNAKLAMVCAISPAQSLV 182
           R+S+LT+LLQ  LGG++K  M   ISP QS V
Sbjct: 2   RNSKLTYLLQPCLGGDSKTLMFVNISPDQSSV 97


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.375    0.168    0.667 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,313,933
Number of Sequences: 28460
Number of extensions: 223621
Number of successful extensions: 3334
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 2002
Number of HSP's gapped (non-prelim): 1507
length of query: 1011
length of database: 4,897,600
effective HSP length: 99
effective length of query: 912
effective length of database: 2,080,060
effective search space: 1897014720
effective search space used: 1897014720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 60 (27.7 bits)