TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147483.2 + phase: 0 
         (384 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC13656                                                               141  2e-34
TC19787 similar to UP|CTNS_ARATH (P57758) Cystinosin homolog, pa...    35  0.027
TC18875 similar to UP|CTNS_ARATH (P57758) Cystinosin homolog, pa...    33  0.061
AV413925                                                               30  0.67
BP038274                                                               30  0.88
TC8992                                                                 29  1.1
TC15872 similar to UP|Q7MV42 (Q7MV42) DNA-binding protein HU, pa...    29  1.5
TC15759 similar to UP|Q8LF06 (Q8LF06) Leucoanthocyanidin dioxyge...    28  2.6
TC17445 weakly similar to UP|O23052 (O23052) YUP8H12.24 protein,...    27  4.4
TC16358 similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (16%)         27  4.4
TC10325                                                                27  7.5
BP048900                                                               26  9.7

>TC13656 
          Length = 656

 Score =  141 bits (356), Expect = 2e-34
 Identities = 64/80 (80%), Positives = 70/80 (87%)
 Frame = +3

Query: 11 KECVKWVETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLL 70
          K CV WVETYF DCLC ++DDISFSLGL SL  WG+AEIPQIITIFR KS+HG+SLAFL 
Sbjct: 6  KPCVGWVETYFNDCLCTMKDDISFSLGLTSLAFWGIAEIPQIITIFRTKSNHGMSLAFLC 185

Query: 71 TWVAGDICNLVGCLLEPATL 90
          TWVAGD CNLVGCLLEPAT+
Sbjct: 186TWVAGDTCNLVGCLLEPATV 245


>TC19787 similar to UP|CTNS_ARATH (P57758) Cystinosin homolog, partial (50%)
          Length = 415

 Score = 34.7 bits (78), Expect = 0.027
 Identities = 22/71 (30%), Positives = 33/71 (45%)
 Frame = +2

Query: 35  SLGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLLTWVAGDICNLVGCLLEPATLPTQF 94
           +LG  + V W ++  PQ+I  FR KS  G++  F+L  +      L+             
Sbjct: 26  ALGWFAFVCWSISFYPQVILNFRRKSVVGLNFDFILLNLTKHTAYLI------------- 166

Query: 95  YTALLYASTTI 105
           Y A LY S+TI
Sbjct: 167 YNASLYFSSTI 199


>TC18875 similar to UP|CTNS_ARATH (P57758) Cystinosin homolog, partial (58%)
          Length = 567

 Score = 33.5 bits (75), Expect = 0.061
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 36  LGLMSLVSWGVAEIPQIITIFRNKSSHGISLAFLL 70
           LG  + +SW ++  PQ+I  FR KS  G++  F+L
Sbjct: 100 LGWFAFISWSISFYPQVILNFRRKSVVGLNFDFVL 204


>AV413925 
          Length = 402

 Score = 30.0 bits (66), Expect = 0.67
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 36  LGLMSLVSWGVAEIPQIITIFRNKSS 61
           LG  + +SW ++  PQ+I  FR KSS
Sbjct: 93  LGWFAFISWSISFYPQVILNFRRKSS 170


>BP038274 
          Length = 500

 Score = 29.6 bits (65), Expect = 0.88
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 144 RREKTLESKTKSSVLWDCNTKWHTKRSSSRGVLLHVSKIVSG---EC---NSTLVYPSKS 197
           R E  LE+K  +S  ++ NT+W ++   S G+LL     ++G    C    S  +YP   
Sbjct: 161 RDESLLEAKVVASASYETNTEWGSEVGFSYGILL--ESTITGYLLHCRGWKSAYLYPKTP 334

Query: 198 C 198
           C
Sbjct: 335 C 337


>TC8992 
          Length = 604

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 10/13 (76%), Positives = 12/13 (91%)
 Frame = +1

Query: 235 FCRWTLWNISSYS 247
           +CRWTLW+ SSYS
Sbjct: 7   WCRWTLWSSSSYS 45


>TC15872 similar to UP|Q7MV42 (Q7MV42) DNA-binding protein HU, partial (16%)
          Length = 541

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 34  FSLGLMSLVSWGVAEIPQIITIFRNKSSHG 63
           FS+ L+S++ W    +PQII I R  S+ G
Sbjct: 261 FSISLVSMIKWSNVCVPQIILIKR*VSAQG 172


>TC15759 similar to UP|Q8LF06 (Q8LF06) Leucoanthocyanidin dioxygenase-like
           protein, partial (34%)
          Length = 929

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 19/92 (20%), Positives = 39/92 (41%), Gaps = 8/92 (8%)
 Frame = -1

Query: 18  ETYFKDCLCNLRDDISFSLGLMSLVSWGVAEIPQIITIFRNKSSHG--------ISLAFL 69
           E +   CL N+ + ++F L ++ ++         +++   N   H         + L   
Sbjct: 419 EIFLSGCLDNINN*MTFLLIILEILKTPHEIFHMVLSF**NACIHQRSWLCKVQVCLLLP 240

Query: 70  LTWVAGDICNLVGCLLEPATLPTQFYTALLYA 101
           + W+   +C+L+GC  +   L     + LLYA
Sbjct: 239 ILWLVQ*VCHLLGCRRKLVKLSLYLNSLLLYA 144


>TC17445 weakly similar to UP|O23052 (O23052) YUP8H12.24 protein, partial
           (18%)
          Length = 921

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 10/28 (35%), Positives = 15/28 (52%)
 Frame = +2

Query: 94  FYTALLYASTTIILLLQIVYYDHILRWC 121
           F + +LY S  +  L  + Y DH+  WC
Sbjct: 506 FCSVILYFSQLLC*LFCVKYLDHVFTWC 589


>TC16358 similar to UP|Q9LG22 (Q9LG22) F14J16.15, partial (16%)
          Length = 877

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 119 RWCKHRQNVKSKLLLLQLYYLTG**RRE 146
           RWC HR++   +L LL+L +  G* RRE
Sbjct: 242 RWCHHRRHYLRRLRLLRLQF--G*NRRE 319


>TC10325 
          Length = 518

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 10/15 (66%), Positives = 11/15 (72%)
 Frame = -2

Query: 261 IHRIYWNKTP*GICC 275
           IHR+Y N  P GICC
Sbjct: 187 IHRLYLNGYPHGICC 143


>BP048900 
          Length = 433

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
 Frame = -2

Query: 92  TQFYTALLYASTTIILLLQIVYYDHI-------LRW--CKHRQNV 127
           T FYT  +  S  +ILLL ++++ HI       + W  C H+ N+
Sbjct: 153 TIFYTFSVSYSILVILLLLVLFHHHIEENKVYFIYWVLCPHKINI 19


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.354    0.155    0.589 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,877,713
Number of Sequences: 28460
Number of extensions: 149524
Number of successful extensions: 1646
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of query: 384
length of database: 4,897,600
effective HSP length: 92
effective length of query: 292
effective length of database: 2,279,280
effective search space: 665549760
effective search space used: 665549760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 56 (26.2 bits)