TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147483.13 - phase: 0 
         (208 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP085408                                                               27  2.0
TC11083 weakly similar to UP|AAQ82687 (AAQ82687) Epa5p, partial ...    27  3.3
TC11027 homologue to UP|Q39828 (Q39828) SDL5A, partial (44%)           26  4.4
BP033271                                                               26  5.7
BP038362                                                               26  5.7
TC16986 similar to UP|AAR86687 (AAR86687) Glycerol kinase  , par...    26  5.7
TC9320 similar to UP|IF3B_ORYSA (Q94HF1) Eukaryotic translation ...    25  7.5
TC19578 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial...    25  9.7
TC8167 similar to PIR|JC7519|JC7519 subtilisin-like serine prote...    25  9.7

>BP085408 
          Length = 350

 Score = 27.3 bits (59), Expect = 2.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 63  ILRTNVEEKLVHTLVQFYDPSFRCFTFPDFQVVPTLEAYSHLLDSPTA 110
           I++TN ++KL+H   +   P          +V+PT EA  H    P A
Sbjct: 117 IIKTNGQDKLIHNTRELCAPHLL*LPPHHLRVMPTWEARCHAGVGPVA 260


>TC11083 weakly similar to UP|AAQ82687 (AAQ82687) Epa5p, partial (5%)
          Length = 518

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 7   CIHRRIGQIKNFVNITGMKKTKSYK 31
           C+H+ I QIK+  N   +K+T  YK
Sbjct: 444 CLHKNIHQIKSDENTAKIKRTN*YK 370


>TC11027 homologue to UP|Q39828 (Q39828) SDL5A, partial (44%)
          Length = 826

 Score = 26.2 bits (56), Expect = 4.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -2

Query: 122 LTPLVVAKDLYLKTSDVSNHLTTKSHIRGFTSKYLLEQAT 161
           L P   +++L +K  D+ N +T++SH      KYL++ AT
Sbjct: 540 LQPFQSSRELIVK--DIINFITSRSHAIKMIFKYLIK*AT 427


>BP033271 
          Length = 541

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 122 LTPLVVAKDLYLKTSDVSNHLTTKSHIRGFTSKYLLE 158
           LTP      L L+TS     L T+  IRGFT   L E
Sbjct: 184 LTPTXFFTPLTLRTSHHRTVLQTRRRIRGFTVCILTE 294


>BP038362 
          Length = 274

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 92  FQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTPLVV 127
           F   PT+EA+S+L    +  ++    P   LTPL++
Sbjct: 209 FPFSPTVEAFSYLGHGTSPWESSHPSPTLDLTPLIL 102


>TC16986 similar to UP|AAR86687 (AAR86687) Glycerol kinase  , partial (24%)
          Length = 491

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 130 DLYLKTSDVSNHLTTKSHIRG 150
           DL LKT   +N++ TK H+ G
Sbjct: 45  DLNLKTQSNNNNIETKKHVEG 107


>TC9320 similar to UP|IF3B_ORYSA (Q94HF1) Eukaryotic translation initiation
           factor 3 subunit 11 (eIF-3 p25) (eIF3k), partial (97%)
          Length = 1086

 Score = 25.4 bits (54), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = +1

Query: 158 EQATCQDALEAILALLIYGLILFPSLDNFVD 188
           EQA    A+E +LAL  Y   + P L+N+V+
Sbjct: 94  EQAQVGYAVEQLLALNPYNPDILPDLENYVN 186


>TC19578 similar to UP|Q8LPN7 (Q8LPN7) AT3g19950/MPN9_19, partial (16%)
          Length = 507

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (57%)
 Frame = +3

Query: 93  QVVPTLEAYSHLLDSPTAEKTPFT 116
           Q++PTL   SH + +PT    P +
Sbjct: 162 QIIPTLTLTSHCISAPTLPPIPIS 233


>TC8167 similar to PIR|JC7519|JC7519 subtilisin-like serine proteinase  -    
                       Arabidopsis thaliana {Arabidopsis thaliana;} ,
            partial (65%)
          Length = 2760

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -3

Query: 75   TLVQFYDPSFRCFTFPDFQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTPLVVAKDLYLK 134
            T+  F  P+F   +F  + V+PT+E  S          T  T P    +P +V   +YL 
Sbjct: 2272 TVYLFLSPTFPNSSFVGYTVIPTMEGPS--------TTTS*TEPA---SPTLVTVLVYLT 2126

Query: 135  TSDVSNHLTTKSH 147
            T   SN  TT+S+
Sbjct: 2125 TFFASN--TTESN 2093


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,330,065
Number of Sequences: 28460
Number of extensions: 40488
Number of successful extensions: 201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of query: 208
length of database: 4,897,600
effective HSP length: 86
effective length of query: 122
effective length of database: 2,450,040
effective search space: 298904880
effective search space used: 298904880
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)