TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147482.6 + phase: 2 /pseudo
         (675 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9096 similar to UP|Q9LD60 (Q9LD60) Spliceosomal-like protein, ...   113  1e-38
TC16505 similar to GB|AAN64529.1|24797034|BT001138 At5g58299/At5...    30  1.7
BP056074                                                               28  6.3
TC11441 similar to PIR|S54157|S54157 extensin-like protein - cow...    27  8.2
TC17074                                                                27  8.2

>TC9096 similar to UP|Q9LD60 (Q9LD60) Spliceosomal-like protein, partial
           (10%)
          Length = 718

 Score =  113 bits (283), Expect(2) = 1e-38
 Identities = 60/79 (75%), Positives = 61/79 (76%)
 Frame = +3

Query: 562 NFMLVM*SHACKRPLLYQVVESAF*MEQLWEVLEHYMLLLHEMMLISSLIWRCI*GRIIH 621
           N MLVM S ACKR LLY VVES   MEQLWEVL H MLLLH MMLIS LIWRCI* R IH
Sbjct: 6   NLMLVMWSQACKRHLLYLVVESVLYMEQLWEVLGHCMLLLHVMMLISFLIWRCI*CRTIH 185

Query: 622 LCVEEIIWLIDPPIFLLSL 640
           LCVEEI WLID PIF L +
Sbjct: 186 LCVEEITWLIDLPIFPLRM 242



 Score = 63.9 bits (154), Expect(2) = 1e-38
 Identities = 30/35 (85%), Positives = 32/35 (90%)
 Frame = +2

Query: 640 LCEQFPTLPMDLQRKIADELDRTRGEILKKLEEYK 674
           LCEQFPTLPMDLQRKIADELDRT  EIL+KLEE +
Sbjct: 257 LCEQFPTLPMDLQRKIADELDRTPAEILRKLEEVR 361


>TC16505 similar to GB|AAN64529.1|24797034|BT001138 At5g58299/At5g58299
           {Arabidopsis thaliana;}, partial (16%)
          Length = 649

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 607 ISSLIWRCI*GRIIHLCVEEIIWLIDPPIFLLSL 640
           ++S  W+C+ GR++      +IWLI P  F L L
Sbjct: 18  LASSFWKCLPGRLLCHLQAAMIWLISPAGFSLLL 119


>BP056074 
          Length = 485

 Score = 27.7 bits (60), Expect = 6.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 591 WEVLEHYMLLLHEMMLISSLIWRCI*GRIIHLCVEEIIWLID-PPIFLLSLCEQFPTLPM 649
           WEV E + L++   +   SL W      ++   V  +I+ I  PP F+ +   +   LP 
Sbjct: 248 WEVCESHHLIIFHCLFFFSLCWMSY--SLVKT*VYHLIFFIRLPPSFICTYLRERAYLPD 75

Query: 650 DL 651
           DL
Sbjct: 74  DL 69


>TC11441 similar to PIR|S54157|S54157 extensin-like protein - cowpea
           (fragment) {Vigna unguiculata;} , partial (6%)
          Length = 541

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 16/67 (23%), Positives = 30/67 (43%)
 Frame = -3

Query: 92  HMTRQSESYHWILMIVCRL*VYRVFLQLQNRFFSLKFKHLLAVRMGQITPLAFS*RWFAE 151
           H   + +  HW++M++C   +Y + +++      L  K L+   M   T +    RW   
Sbjct: 206 H*EEKDDHGHWLVMVLC---LYLLVVEIG----LLALKVLVKEVMMMTTVVTVEKRWLFG 48

Query: 152 WCTI*NC 158
           WC +  C
Sbjct: 47  WCLMSYC 27


>TC17074 
          Length = 573

 Score = 27.3 bits (59), Expect = 8.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 70  LLVWTLLQCPKADKDPVFLQLDHMTRQSESYH 101
           L++W++  C K    P+ LQ+ H++RQS  +H
Sbjct: 11  LVLWSI-SCDK*ATTPMLLQVLHLSRQSYYFH 103


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.360    0.160    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,762,647
Number of Sequences: 28460
Number of extensions: 254000
Number of successful extensions: 2684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1978
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 2114
length of query: 675
length of database: 4,897,600
effective HSP length: 96
effective length of query: 579
effective length of database: 2,165,440
effective search space: 1253789760
effective search space used: 1253789760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 58 (26.9 bits)