BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147471.11 - phase: 0 /pseudo
(1453 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP033602 97 1e-20
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 87 1e-17
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 77 1e-14
BP057233 69 7e-12
BP043850 68 9e-12
BP063694 68 1e-11
AV780009 67 2e-11
BP084332 63 4e-10
AV766088 60 3e-09
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 51 1e-06
BP054351 45 6e-05
BP052124 43 3e-04
AV406379 42 0.001
AV772199 39 0.006
AV779990 31 0.016
TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 36 0.038
BP053302 36 0.050
TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B pre... 35 0.065
TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprot... 35 0.085
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 28 0.34
>BP033602
Length = 533
Score = 97.4 bits (241), Expect = 1e-20
Identities = 41/91 (45%), Positives = 63/91 (69%)
Frame = +3
Query: 478 REKVLLYHYRVGDPSFRVIKQLFPLFFKTLDVESFQCELCELAKHKRVTFSVSNKMSTFP 537
R++++L+H R+G P+F+ ++ LFP FK ++ S +CE C LAK++R + ++ P
Sbjct: 261 RDQIMLWHNRLGHPNFQYLRHLFPDLFKNVNCSSLECESCVLAKNQRAPYYSQPYHASRP 440
Query: 538 FYLVHTNVWGPSNVPNISGARWFVTFIDDCT 568
FYL+H++VWGPS + G RWFVTFIDD T
Sbjct: 441 FYLIHSDVWGPSKITTQFGKRWFVTFIDDHT 533
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 87.4 bits (215), Expect = 1e-17
Identities = 40/85 (47%), Positives = 60/85 (70%)
Frame = +1
Query: 1369 FDEPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADL 1428
F++P +YCDN A +IA NPV H+RTKH+E++ H ++E++ GLI +SS + LAD+
Sbjct: 40 FEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIHLLPISSSEPLADI 219
Query: 1429 LTKRLNNNNFEKFVSKLGMIDIHSP 1453
TK L+ NF + +KLG+I+I SP
Sbjct: 220 YTKALSPQNFHQICAKLGLINICSP 294
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 77.4 bits (189), Expect = 1e-14
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +1
Query: 1369 FDEPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADL 1428
F P LYCD++ A +IA N V H+RTKHL+++ H ++EKL + L +SS D AD+
Sbjct: 49 FISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKLFHLLPISSVDQTADI 228
Query: 1429 LTKRLNNNNFEKFVSKLGMIDIHS 1452
LTK L + F VSKLG+++I+S
Sbjct: 229 LTKPLESGPFSHLVSKLGVLNIYS 300
>BP057233
Length = 473
Score = 68.6 bits (166), Expect = 7e-12
Identities = 33/79 (41%), Positives = 51/79 (63%)
Frame = -2
Query: 1375 LYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKRLN 1434
L+CDN A +A NPV H R+KH+E++ H+I++++ + YV + D +AD LTK L+
Sbjct: 445 LWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCLTKPLS 266
Query: 1435 NNNFEKFVSKLGMIDIHSP 1453
+ F + KLG+ IHSP
Sbjct: 265 HTRFSQLRDKLGV--IHSP 215
>BP043850
Length = 515
Score = 68.2 bits (165), Expect = 9e-12
Identities = 33/79 (41%), Positives = 49/79 (61%)
Frame = -1
Query: 1371 EPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLT 1430
+P L+ DN AI IA NPV H+ T+H+EV+ H ++E D +I P+VS+ +AD+LT
Sbjct: 461 QPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRRVITLPHVSTSVQIADILT 282
Query: 1431 KRLNNNNFEKFVSKLGMID 1449
K L VSKL +++
Sbjct: 281 KSLTRQRHNFLVSKLMLVE 225
>BP063694
Length = 511
Score = 67.8 bits (164), Expect = 1e-11
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Frame = -2
Query: 454 IWITKTQAQSYLATTFFLESIKTNREKVLLYHYRVGDPSFRVIKQLFPLFFKTLDVESFQ 513
+++ +Q+ L T+ L R L+H R+G +F +IKQL LDV S
Sbjct: 432 LYVLNQDSQALLTTSSPLP-----RASFELWHSRLGHVNFDIIKQLHK--HGCLDVSSIL 274
Query: 514 -----CELCELAKHKRVTFSVSNKMSTFPFYLVHTNVWGPSNVPNISGARWFVTFIDDCT 568
C C++AK KR+ F +NK ++ L+H ++ GPS V +I G +FV F+DD +
Sbjct: 273 PKPICCTSCQMAKSKRLVFHDNNKRASAVLDLIHCDLRGPSPVASIDGFSYFVIFVDDFS 94
Query: 569 WVTWVY 574
TW Y
Sbjct: 93 RFTWFY 76
>AV780009
Length = 529
Score = 67.4 bits (163), Expect = 2e-11
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = -1
Query: 1372 PMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTK 1431
P+ L+CDN+ A++IAHNP H+RTKH+E++ H ++ KL +GLI +S+ LAD+ TK
Sbjct: 220 PVPLFCDNQSALHIAHNPTFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTK 41
>BP084332
Length = 368
Score = 62.8 bits (151), Expect = 4e-10
Identities = 30/84 (35%), Positives = 48/84 (56%), Gaps = 1/84 (1%)
Frame = +2
Query: 1363 RLEDKDFDEP-MRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSS 1421
+LED E + +YCDN AI+++ NP+ H R KH+EV HFI++ + G++ +V +
Sbjct: 116 QLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDT 295
Query: 1422 QDNLADLLTKRLNNNNFEKFVSKL 1445
AD+ TK L + F + L
Sbjct: 296 DHQWADIFTKPLAEDRFNFILKNL 367
>AV766088
Length = 501
Score = 59.7 bits (143), Expect = 3e-09
Identities = 31/94 (32%), Positives = 54/94 (56%), Gaps = 2/94 (2%)
Frame = -3
Query: 483 LYHYRVGDPSFRVIKQLFPLFFKTLDVESFQ--CELCELAKHKRVTFSVSNKMSTFPFYL 540
L+H R+G PS ++ L F + ++ ++ CE C KH R+ F SN ++ PF +
Sbjct: 307 LWHSRLGHPSSSALRYLRSNKFISYELLNYSPVCESCVFGKHVRLPFVSSNNVTVMPFDI 128
Query: 541 VHTNVWGPSNVPNISGARWFVTFIDDCTWVTWVY 574
+H+++W S V + +G R++V F+DD T W +
Sbjct: 127 LHSDLW-TSPVLSSAGHRFYVLFLDDFTDFLWTF 29
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 51.2 bits (121), Expect = 1e-06
Identities = 22/60 (36%), Positives = 41/60 (67%)
Frame = +3
Query: 1375 LYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKRLN 1434
+YCDN+ A+++A N V H RT+++E++ H + K+ G++ +V S D +AD+ TK ++
Sbjct: 84 IYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGILHLLHVPSSDQVADVFTKTIS 263
>BP054351
Length = 431
Score = 45.4 bits (106), Expect = 6e-05
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = -1
Query: 478 REKVLLYHYRVGDPSFRVIKQLFPLFFKTLDVESFQCELC 517
R++++L+H R+G P+F+ ++ LFP FK ++ S +CE C
Sbjct: 125 RDQIMLWHNRLGHPNFQYLRHLFPDLFKNVNCSSLECESC 6
>BP052124
Length = 467
Score = 43.1 bits (100), Expect = 3e-04
Identities = 22/46 (47%), Positives = 29/46 (62%)
Frame = -2
Query: 1374 RLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYV 1419
R +CDN A+ +A P+ H R H EV+ + KEKL +GLI T YV
Sbjct: 460 RKFCDNNSALTLAPRPI*HSRPVHFEVDCPYPKEKLGTGLI-TAYV 326
>AV406379
Length = 226
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = -3
Query: 483 LYHYRVGDPSFRVIKQLFPLFFKTLDVESFQCELCELAKHKRVTF-SVSNKMSTFPFY 539
L H R+G PS +KQ+ P K +++ +CE C+L KH R +F S +++ + PF+
Sbjct: 167 LLHCRLGHPSLERLKQMVP---KLSHLKTLECESCQLGKHVRASFPSSTSRPAVSPFH 3
>AV772199
Length = 495
Score = 38.9 bits (89), Expect = 0.006
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Frame = +2
Query: 1385 IAHNPVQHDRTKHLEVNKHFIKEKLDSGLI-CTPYVSSQD-----NLADLLTKR 1432
IA+N Q DRTKH E++ H IKEK + ++ T YVS QD +A +LTK+
Sbjct: 182 IANNSNQ*DRTKHKEIH*HSIKEKFEKVIL*VTVYVSLQDVSVSWGMAYVLTKQ 343
>AV779990
Length = 542
Score = 31.2 bits (69), Expect(2) = 0.016
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 1378 DNKYAINIAHNPVQHDRTKH 1397
DN A++I+ NP+ H+RTKH
Sbjct: 312 DNHAALDISSNPISHERTKH 371
Score = 25.0 bits (53), Expect(2) = 0.016
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 1397 HLEVNKHFIKEKLDSGLICT 1416
++EV+ HFI EKL+ LI T
Sbjct: 367 NIEVDCHFICEKLEQNLIST 426
>TC19389 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (6%)
Length = 498
Score = 36.2 bits (82), Expect = 0.038
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 1375 LYCDNKYAINIAHNPVQHDRTKHLEVNKHF 1404
LYCDN+ AI + N H R+KH++V H+
Sbjct: 173 LYCDNQGAIYLGQNSTFHSRSKHIDVRYHW 262
>BP053302
Length = 432
Score = 35.8 bits (81), Expect = 0.050
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -1
Query: 468 TFFLESIKTNREKVLLYHYRVGDPSFRVIKQLFPLFF 504
+FF+ + N + V+L+H R+G PSF +K LFP F
Sbjct: 129 SFFV--LNNNDDHVMLWHLRLGHPSFHYLKPLFPKLF 25
>TC9337 similar to UP|PME_PRUPE (Q43062) Pectinesterase PPE8B precursor
(Pectin methylesterase) (PE) , partial (54%)
Length = 1145
Score = 35.4 bits (80), Expect = 0.065
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 514 CELCELAKHKRVTFSVSNKMSTFPFYLVHTNVW 546
C+ C L KH R+ FS S ++ PF ++H+++W
Sbjct: 1029 CDSCVLGKHVRLPFSSSETITLRPFDILHSDLW 1127
>TC10186 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(4%)
Length = 528
Score = 35.0 bits (79), Expect = 0.085
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 1378 DNKYAINIAHNPVQHDRTKHLE 1399
DNK AI++A NPV H R+KH+E
Sbjct: 5 DNKSAIDLAKNPVSHGRSKHIE 70
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(20%)
Length = 479
Score = 27.7 bits (60), Expect(2) = 0.34
Identities = 10/18 (55%), Positives = 15/18 (82%)
Frame = +3
Query: 1372 PMRLYCDNKYAINIAHNP 1389
PM L+CDN+ A++I+ NP
Sbjct: 48 PMPLWCDNQAALHISSNP 101
Score = 23.9 bits (50), Expect(2) = 0.34
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 1392 HDRTKHLEVNKH 1403
H+RTKH+EV+ H
Sbjct: 113 HERTKHIEVDCH 148
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.364 0.163 0.626
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,115,502
Number of Sequences: 28460
Number of extensions: 435861
Number of successful extensions: 5936
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 3284
Number of HSP's successfully gapped in prelim test: 178
Number of HSP's that attempted gapping in prelim test: 2522
Number of HSP's gapped (non-prelim): 3726
length of query: 1453
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1351
effective length of database: 1,994,680
effective search space: 2694812680
effective search space used: 2694812680
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147471.11