BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147435.2 + phase: 0
(384 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 76 8e-15
TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 76 1e-14
TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 74 3e-14
TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (... 74 3e-14
AU089356 74 4e-14
TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 72 1e-13
TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 71 3e-13
AV421030 66 8e-12
TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%) 63 9e-11
AV428412 61 3e-10
TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal... 57 7e-09
AV410621 49 1e-06
AV415545 49 1e-06
TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal prote... 48 3e-06
TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 46 1e-05
TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension ... 46 1e-05
CN824966 46 1e-05
TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {... 45 3e-05
AV769937 39 0.001
AV427711 37 0.007
>TC14058 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (43%)
Length = 563
Score = 76.3 bits (186), Expect = 8e-15
Identities = 54/165 (32%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Frame = +3
Query: 28 SHLSFEDKSISIFL-SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRE 86
S L+F + IF+ +++G V DTI++VK KIQ E +P ++Q+L++AG++
Sbjct: 48 SPLNFVFFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQ 221
Query: 87 LARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAK 146
L TL DY + + LHL+++L I VKT +GK + +VE + +K +I
Sbjct: 222 LEDGRTLA-DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 398
Query: 147 KEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
KE D +Q L+ G++LED + + D + ++ +HL +R R
Sbjct: 399 KEGIPPD--QQRLIFAGKQLEDGRTLADYNIQ-KESTLHLVLRLR 524
Score = 52.4 bits (124), Expect = 1e-07
Identities = 31/84 (36%), Positives = 50/84 (58%)
Frame = +3
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 321 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 491
Query: 102 GNVLHLIIKLSDLQLINVKTSSGK 125
+ LHL+++L I VKT +GK
Sbjct: 492 ESTLHLVLRLRGGMQIFVKTLTGK 563
>TC14047 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (67%)
Length = 842
Score = 75.9 bits (185), Expect = 1e-14
Identities = 49/150 (32%), Positives = 84/150 (55%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L D L DY +
Sbjct: 325 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQL-EDDRTLADYNIQK 495
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 496 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 669
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 670 AGKQLEDGRTLADYNIQ-KESTLHLVLRLR 756
Score = 75.1 bits (183), Expect = 2e-14
Identities = 49/150 (32%), Positives = 84/150 (55%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 97 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 267
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 268 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 441
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 442 AGKQLEDDRTLADYNIQ-KESTLHLVLRLR 528
Score = 56.6 bits (135), Expect = 7e-09
Identities = 33/91 (36%), Positives = 54/91 (59%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 553 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 723
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVE 132
+ LHL+++L I VKT +GK + +VE
Sbjct: 724 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 816
>TC14049 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (70%)
Length = 868
Score = 74.3 bits (181), Expect = 3e-14
Identities = 49/150 (32%), Positives = 84/150 (55%)
Frame = +3
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 96 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 266
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 267 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 440
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 441 AGKQLEDGRTLADYNIQ-KESTLHLVLRLR 527
Score = 63.5 bits (153), Expect = 5e-11
Identities = 40/118 (33%), Positives = 64/118 (53%)
Frame = +3
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 324 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 494
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQEL 159
+ LHL+++L I VKT +GK + +VE + +K +I KE D E L
Sbjct: 495 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPEAHL 668
Score = 48.5 bits (114), Expect = 2e-06
Identities = 26/75 (34%), Positives = 42/75 (55%)
Frame = +1
Query: 74 LTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFSFQVER 133
L Q+L++AG++L TL DY + + LHL+++L I VKT +GK + +VE
Sbjct: 643 LQTSQRLIFAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 819
Query: 134 GRDVKYIKRRIAKKE 148
+ +K +I KE
Sbjct: 820 SDTIDNVKAKIQDKE 864
>TC14054 PIR|S03599|UQFS ubiquitin precursor - common sunflower (fragment)
{Helianthus annuus;} , partial (93%)
Length = 1380
Score = 74.3 bits (181), Expect = 3e-14
Identities = 49/150 (32%), Positives = 84/150 (55%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 748 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 918
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 919 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 1092
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 1093AGKQLEDGRTLADYNIQ-KESTLHLVLRLR 1179
Score = 74.3 bits (181), Expect = 3e-14
Identities = 49/150 (32%), Positives = 84/150 (55%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 64 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 234
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 235 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 408
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 409 AGKQLEDGRTLADYNIQ-KESTLHLVLRLR 495
Score = 73.9 bits (180), Expect = 4e-14
Identities = 49/150 (32%), Positives = 84/150 (55%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 292 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 462
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 463 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 636
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 637 AGKQLEDGRSLADYNIQ-KESTLHLVLRLR 723
Score = 72.8 bits (177), Expect = 9e-14
Identities = 48/150 (32%), Positives = 84/150 (56%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L +L DY +
Sbjct: 520 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRSLA-DYNIQK 690
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 691 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 864
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
G++LED + + D + ++ +HL +R R
Sbjct: 865 AGKQLEDGRTLADYNIQ-KESTLHLVLRLR 951
>AU089356
Length = 600
Score = 73.9 bits (180), Expect = 4e-14
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 46 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 216
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 217 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 390
Query: 162 NGERLEDQKLIDDICCKHNDAVVHLFVRKRNA-KVHRRPFELSIVTTDLADTKTDDVFEN 220
G++LED + + D ++ +HL +R R ++ + +T + + T D E
Sbjct: 391 AGKQLEDGRTLADYNI-XKESTLHLVLRLRGGMQIFVKTLTGKTITLXVESSDTIDNXEG 567
Query: 221 SCGRK 225
R+
Sbjct: 568 KNSRQ 582
>TC14059 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (37%)
Length = 574
Score = 72.4 bits (176), Expect = 1e-13
Identities = 47/136 (34%), Positives = 79/136 (57%)
Frame = +1
Query: 56 DTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQ 115
DTI++VK KIQ E +P ++Q+L++AG++L TL DY + + LHL+++L
Sbjct: 16 DTIDNVKAKIQDQEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGM 186
Query: 116 LINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDI 175
I VKT +GK + +VE + +K +I KE D +Q L+ G++LED + + D
Sbjct: 187 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLADY 360
Query: 176 CCKHNDAVVHLFVRKR 191
+ ++ +HL +R R
Sbjct: 361 NIQ-KESTLHLVLRLR 405
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY +
Sbjct: 202 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNIQK 372
Query: 102 GNVLHLIIKL 111
+ LHL+++L
Sbjct: 373 ESTLHLVLRL 402
>TC14060 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 567
Score = 71.2 bits (173), Expect = 3e-13
Identities = 45/133 (33%), Positives = 75/133 (55%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 169 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 339
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVC 161
+ LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+
Sbjct: 340 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF 513
Query: 162 NGERLEDQKLIDD 174
G++LED + + D
Sbjct: 514 AGKQLEDGRTLAD 552
Score = 63.9 bits (154), Expect = 4e-11
Identities = 43/130 (33%), Positives = 73/130 (56%)
Frame = +1
Query: 62 KFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKT 121
K KIQ E +P ++Q+L++AG++L TL DY + + LHL+++L I VKT
Sbjct: 1 KAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGMQIFVKT 171
Query: 122 SSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHND 181
+GK + +VE + +K +I KE D +Q L+ G++LED + + D + +
Sbjct: 172 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLADYNIQ-KE 342
Query: 182 AVVHLFVRKR 191
+ +HL +R R
Sbjct: 343 STLHLVLRLR 372
>AV421030
Length = 246
Score = 66.2 bits (160), Expect = 8e-12
Identities = 37/78 (47%), Positives = 51/78 (64%)
Frame = +3
Query: 201 ELSIVTTDLADTKTDDVFENSCGRKFEVGGVEDTDAIQRAVPRKLPDRDFLLEPIIVNPK 260
ELSI +L +TK+ DV +++ + + +A + +P+K+ RD LLEPIIVNPK
Sbjct: 30 ELSIAAAELNETKSYDVSKDT---------MREYEATKHFMPKKVIGRDLLLEPIIVNPK 182
Query: 261 IELASVIRNMVNSAYDGL 278
IEL S I NM+NS YDGL
Sbjct: 183 IELDSGIWNMINSTYDGL 236
>TC14040 UP|Q41754 (Q41754) Ubiquitin, partial (33%)
Length = 527
Score = 62.8 bits (151), Expect = 9e-11
Identities = 42/128 (32%), Positives = 72/128 (55%)
Frame = +3
Query: 64 KIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSS 123
KIQ E +P ++Q+L++AG++L TL DY + + LHL+++L I VKT +
Sbjct: 6 KIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGMQIFVKTLT 176
Query: 124 GKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAV 183
GK + +VE + +K +I KE D +Q L+ G++LED + + D + ++
Sbjct: 177 GKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLADYNIQ-KEST 347
Query: 184 VHLFVRKR 191
+HL +R R
Sbjct: 348 LHLVLRLR 371
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Frame = +3
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY +
Sbjct: 168 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNIQK 338
Query: 102 GNVLHLIIKL 111
+ LHL+++L
Sbjct: 339 ESTLHLVLRL 368
>AV428412
Length = 426
Score = 61.2 bits (147), Expect = 3e-10
Identities = 36/106 (33%), Positives = 60/106 (55%)
Frame = +2
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L TL DY +
Sbjct: 116 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQK 286
Query: 102 GNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKK 147
+ LHL+++L I VKT +GK + +VE + +K +I K
Sbjct: 287 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 424
Score = 53.1 bits (126), Expect = 7e-08
Identities = 35/110 (31%), Positives = 60/110 (53%)
Frame = +2
Query: 82 YAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIK 141
+AG++L TL DY + + LHL+++L I VKT +GK + +VE + +K
Sbjct: 2 FAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 178
Query: 142 RRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAVVHLFVRKR 191
+I KE D +Q L+ G++LED + + D + ++ +HL +R R
Sbjct: 179 AKIQDKEGIPPD--QQRLIFAGKQLEDGRTLADYNIQ-KESTLHLVLRLR 319
>TC14057 similar to GB|AAM62519.1|21553426|AY085287 50S ribosomal protein L3
{Arabidopsis thaliana;} , partial (83%)
Length = 1408
Score = 56.6 bits (135), Expect = 7e-09
Identities = 32/89 (35%), Positives = 53/89 (58%)
Frame = +1
Query: 56 DTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQ 115
DTI++VK KIQ E +P ++Q+L++AG++L TL DY + + LHL+++L
Sbjct: 31 DTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLA-DYNIQKESTLHLVLRLRGGM 201
Query: 116 LINVKTSSGKEFSFQVERGRDVKYIKRRI 144
I VKT +GK + +VE + +K +
Sbjct: 202 QIFVKTLTGKTITLEVESSDTIDNVKATV 288
>AV410621
Length = 292
Score = 48.9 bits (115), Expect = 1e-06
Identities = 32/92 (34%), Positives = 52/92 (55%), Gaps = 1/92 (1%)
Frame = +3
Query: 30 LSFEDKSISIFL-SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELA 88
LS + IF+ +++G V DTI++VK KIQ E +P ++Q+L++AG++L
Sbjct: 24 LSISPTKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLE 197
Query: 89 RSDTLLKDYGVTDGNVLHLIIKLSDLQLINVK 120
T L DY + + LHL+++L I VK
Sbjct: 198 DGRT-LADYNIQKESTLHLVLRLRGGMQIFVK 290
>AV415545
Length = 352
Score = 48.9 bits (115), Expect = 1e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +3
Query: 330 DGEGLKKGTIVGQGAFREVAAYVLE 354
DGEGLKKGT VGQGAFREVAAYVL+
Sbjct: 3 DGEGLKKGTRVGQGAFREVAAYVLD 77
>TC14045 homologue to PIR|S40240|S40240 ubiquitin/ribosomal protein S27a
fusion protein - white lupine {Lupinus
albus;}, complete
Length = 729
Score = 47.8 bits (112), Expect = 3e-06
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 34 DKSISIFL-SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDT 92
D + IF+ +++G V DTI++VK KIQ E +P ++Q+L++AG++L T
Sbjct: 73 DPKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT 246
Query: 93 LLKDYGVTDGNVLHLIIKL 111
L DY + + LHL+++L
Sbjct: 247 -LADYNIQKESTLHLVLRL 300
>TC14043 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 502
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Frame = +2
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY +
Sbjct: 53 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNIQK 223
Query: 102 GNVLHLIIKL 111
+ LHL+++L
Sbjct: 224 ESTLHLVLRL 253
Score = 43.5 bits (101), Expect = 6e-05
Identities = 28/87 (32%), Positives = 48/87 (54%)
Frame = +2
Query: 105 LHLIIKLSDLQLINVKTSSGKEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGE 164
LHL+++L I VKT +GK + +VE + +K +I KE D +Q L+ G+
Sbjct: 5 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGK 178
Query: 165 RLEDQKLIDDICCKHNDAVVHLFVRKR 191
+LED + + D + ++ +HL +R R
Sbjct: 179 QLEDGRTLADYNIQ-KESTLHLVLRLR 256
>TC14618 homologue to UP|AAQ76040 (AAQ76040) Ubiquitin extension protein,
partial (97%)
Length = 644
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY +
Sbjct: 49 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNIQK 219
Query: 102 GNVLHLIIKL 111
+ LHL+++L
Sbjct: 220 ESTLHLVLRL 249
>CN824966
Length = 600
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTD 101
+++G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY +
Sbjct: 34 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNIQK 204
Query: 102 GNVLHLIIKL 111
+ LHL+++L
Sbjct: 205 ESTLHLVLRL 234
>TC14048 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (18%)
Length = 427
Score = 44.7 bits (104), Expect = 3e-05
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +2
Query: 45 GSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNV 104
G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY + +
Sbjct: 2 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNIQKEST 172
Query: 105 LHLIIKL 111
LHL+++L
Sbjct: 173 LHLVLRL 193
>AV769937
Length = 296
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = -2
Query: 58 IESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKL 111
I++VK KIQ E +P ++Q+L++AG++L + L DY + + LHL+++L
Sbjct: 295 IDNVKAKIQAKEGIP--PHQQRLIFAGKQL-KDGRPLADYNIQKESTLHLVLRL 143
>AV427711
Length = 251
Score = 36.6 bits (83), Expect = 0.007
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +1
Query: 42 SVSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGV 99
+++G V DTI++VK KIQ E +P ++Q+L++AG++L T L DY +
Sbjct: 70 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRT-LADYNI 234
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,509,647
Number of Sequences: 28460
Number of extensions: 66073
Number of successful extensions: 406
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of query: 384
length of database: 4,897,600
effective HSP length: 92
effective length of query: 292
effective length of database: 2,279,280
effective search space: 665549760
effective search space used: 665549760
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC147435.2