TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147435.10 + phase: 0 /pseudo
         (612 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18710                                                                55  3e-08
TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, p...    50  1e-06
AV780221                                                               35  0.046
AV428287                                                               28  5.6
TC7935 similar to UP|O49447 (O49447) ADP, ATP carrier-like prote...    27  7.3
TC15704 similar to UP|O22265 (O22265) Expressed protein (At2g474...    27  9.6
TC7883 homologue to UP|ADT1_GOSHI (O22342) ADP,ATP carrier prote...    27  9.6
TC11122 similar to UP|Q9SAK4 (Q9SAK4) T8K14.14 protein, partial ...    27  9.6

>TC18710 
          Length = 843

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 33/109 (30%), Positives = 53/109 (48%)
 Frame = +2

Query: 39  GADEYNFAFVKEFWYLMKNEVRIMFDQIHANELLPKSMLAYFVALIPKVSSPLELKDYRT 98
           G D  N  F ++   ++K+ V            +P  +    V LIPKV  P  +  +R 
Sbjct: 188 GMDGMNGLFYQKNGDVVKDSVT*AILAFLERAEIPNEINETLVTLIPKVPHPESINQFRP 367

Query: 99  ISLLGSLYKLLAKVLARRLAGVLSSVISTTQSAFLKGTNLVDGVLVVNE 147
           IS    LYK+++K+   RL   +  +IS  QS F++G  + D +L+V E
Sbjct: 368 ISGCTFLYKVISKIFVARLKDAMPDLISPMQSGFIQGRQIQDNLLIVQE 514


>TC18198 weakly similar to UP|Q9XGZ5 (Q9XGZ5) T1N24.20 protein, partial
           (14%)
          Length = 592

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 32/114 (28%), Positives = 55/114 (48%)
 Frame = -3

Query: 13  NDLLVAPFHMEEIEVVVRESDGNKSPGADEYNFAFVKEFWYLMKNEVRIMFDQIHANELL 72
           N  L A    +EI+  V      K+PG D  N  F ++   ++KN+V         +  L
Sbjct: 350 NHKLCAQVSTDEIKEAVFSMGDLKAPGMDGINGLFYQQNREIVKNDVNNAILDFFDHGEL 171

Query: 73  PKSMLAYFVALIPKVSSPLELKDYRTISLLGSLYKLLAKVLARRLAGVLSSVIS 126
           P  +    V LIPK+     ++ +R IS    +YK+++K++  RL   + ++IS
Sbjct: 170 PVELNETLVTLIPKIPHAEAIQQFRPISCCSFIYKVISKIIVARLKPDMVNLIS 9


>AV780221 
          Length = 461

 Score = 34.7 bits (78), Expect = 0.046
 Identities = 23/67 (34%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
 Frame = +2

Query: 402 RVQREFLWEGIGRGEEN*LGEMEVSVSTKEKWRY-RDKIHLANECVFVGKIEMETLRGGN 460
           ++ R F WEG G  EEN LG+ME  + T+ +  +   ++ L  +  F G++EME   G  
Sbjct: 95  QLMRSFFWEGGGGREENSLGKMEYGL*TQGRGGFGGSELGLVQQGSF-GQVEMEDA*GEG 271

Query: 461 GVVEGGS 467
            ++  GS
Sbjct: 272 WIMV*GS 292


>AV428287 
          Length = 286

 Score = 27.7 bits (60), Expect = 5.6
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 5   FNRLSEVDNDLLVAPFHMEEIEVVVRESDGNKSPG---ADEYNFAFVKEFWYLMKNEVR 60
           F+ L+  + D   +PF+++E       SD +  PG   AD Y+F   + F + ++N  R
Sbjct: 100 FSPLTATNADYDHSPFYLQEALEQYAPSDADSDPGRDSADVYSFDQFRMFEFKVRNCAR 276


>TC7935 similar to UP|O49447 (O49447) ADP, ATP carrier-like protein,
           partial (83%)
          Length = 1465

 Score = 27.3 bits (59), Expect = 7.3
 Identities = 11/36 (30%), Positives = 18/36 (49%)
 Frame = +2

Query: 248 RWI*IYSKVLRWEEMVWWCLICNMPMTLFVLGKLPW 283
           RW+    +V+ WE  +WW   C +P+     G  P+
Sbjct: 539 RWL---LEVVCWEFGIWWGCWCFLPLICLFFGLCPY 637


>TC15704 similar to UP|O22265 (O22265) Expressed protein
           (At2g47450/T30B22.25), partial (25%)
          Length = 664

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 20/52 (38%), Positives = 23/52 (43%)
 Frame = +3

Query: 422 EMEVSVSTKEKWRYRDKIHLANECVFVGKIEMETLRGGNGVVEGGS*GKIWP 473
           E  VS + + +W  R       EC   G    E LRGG GV  GG  G  WP
Sbjct: 141 EFGVSRAVEGRWWKR-----VGECEVCGGGSGEGLRGGAGVRGGGGGG--WP 275


>TC7883 homologue to UP|ADT1_GOSHI (O22342) ADP,ATP carrier protein 1,
           mitochondrial precursor (ADP/ATP translocase 1) (Adenine
           nucleotide translocator 1) (ANT 1), partial (54%)
          Length = 856

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +1

Query: 237 LRKGLVV**GMRWI*IYSKVLRWEEMVWWCLICNMPMTLFVLGKLPWRIFGR*R 290
           L+K   +* G RW+    +++ WE   WW     +P+    LG  P+  FG+*R
Sbjct: 535 LQKAFQL*KG*RWL---LEMVCWEFGFWWGCWGFLPIICLFLGLCPYS-FGK*R 684


>TC11122 similar to UP|Q9SAK4 (Q9SAK4) T8K14.14 protein, partial (7%)
          Length = 518

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (57%)
 Frame = +2

Query: 551 GGYGGGLWGDFGGELGLEFYLEAKTICMG 579
           GG+     G  G + G++ YLE K +C+G
Sbjct: 14  GGFKPSGLGREGSQYGMDEYLEIKYVCLG 100


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.165    0.605 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,978,497
Number of Sequences: 28460
Number of extensions: 164889
Number of successful extensions: 1775
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 1400
length of query: 612
length of database: 4,897,600
effective HSP length: 96
effective length of query: 516
effective length of database: 2,165,440
effective search space: 1117367040
effective search space used: 1117367040
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 58 (26.9 bits)