BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147434.12 - phase: 0
(707 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP079927 94 1e-19
AV769427 90 1e-18
TC10797 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Ar... 89 2e-18
BP053178 79 3e-15
TC11222 77 1e-14
BP038206 69 3e-12
BP078300 64 1e-10
AW428655 58 6e-09
AV777955 55 5e-08
BP078466 37 3e-07
BP057617 43 2e-04
BP041056 35 0.031
AV776899 32 0.27
TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Ara... 32 0.35
AW164143 31 0.77
BP035176 30 1.0
BP061345 30 1.0
TC11153 similar to UP|Q9FJJ6 (Q9FJJ6) Genomic DNA, chromosome 5,... 29 2.3
TC11884 29 2.3
TC12608 28 5.0
>BP079927
Length = 438
Score = 93.6 bits (231), Expect = 1e-19
Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 25/130 (19%)
Frame = +3
Query: 3 SVMESISQNLSSTLT------SGSANVAEPT------------EQVAVATQVPVVGLPPL 44
+VME +Q+LSST + +G +NV +P + ++ P V LPP
Sbjct: 27 TVMEQPNQHLSSTPSPIDTQAAGPSNVTQPAGASIGGSQPTQGAETEISMADPAV-LPPP 203
Query: 45 PCLA-----KRRKPNAGGPRRTSPAWDHFIKLPDEP--EPTAACIHCHKRYLCDPKTHGT 97
P + K+RKPNA GPR T+ W HF +LP+ +PTAAC +C KRYLCD KTHGT
Sbjct: 204 PEVQGANPKKKRKPNASGPRTTTSIWKHFTRLPENEVQDPTAACNYCGKRYLCDSKTHGT 383
Query: 98 SNLLAHSKVC 107
+NL H K+C
Sbjct: 384 TNLNTHLKIC 413
>AV769427
Length = 492
Score = 89.7 bits (221), Expect = 1e-18
Identities = 44/101 (43%), Positives = 65/101 (63%), Gaps = 1/101 (0%)
Frame = -1
Query: 598 KNELERYLDEERAEDVN-FDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGG 656
K EL++YL+E V+ FD+L WK N +YP LS M RD+LA PVS+V ++S F T
Sbjct: 432 KCELDQYLEESLLPRVSDFDVLGWWKLNKIKYPTLSKMARDILAVPVSSVPADSVFDTKS 253
Query: 657 RVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNINEEF 697
+ +D YRSSL P+ EAL+CA++W++ + + + EF
Sbjct: 252 KEMDQYRSSLRPETVEALVCAKDWMQYGAAEASNALVKMEF 130
>TC10797 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (10%)
Length = 657
Score = 89.4 bits (220), Expect = 2e-18
Identities = 45/98 (45%), Positives = 62/98 (62%), Gaps = 1/98 (1%)
Frame = +3
Query: 585 FKEHLKLKESIVKKNELERYLDEERAEDV-NFDILLSWKQNSCRYPVLSSMVRDVLATPV 643
F ++ S K+EL++YL+E V +FD+L WK N +YP LS M RD+L+ PV
Sbjct: 12 FDAYIMETSSQQMKSELDQYLEESLLPRVPDFDVLGWWKINQVKYPTLSKMARDILSIPV 191
Query: 644 STVASESAFSTGGRVLDTYRSSLNPQMAEALICAQNWL 681
STV SES F + +D YRSSL P+ EAL+C Q+W+
Sbjct: 192 STVPSESFFDRKSQEMDQYRSSLRPEAVEALVCTQDWM 305
>BP053178
Length = 529
Score = 78.6 bits (192), Expect = 3e-15
Identities = 37/58 (63%), Positives = 46/58 (78%)
Frame = -1
Query: 627 RYPVLSSMVRDVLATPVSTVASESAFSTGGRVLDTYRSSLNPQMAEALICAQNWLKPT 684
R P+LS + RD+L PVSTVASESAFSTGGRVL+ +RSSL P+MA+ IC +W+K T
Sbjct: 529 RLPMLSRIARDILXIPVSTVASESAFSTGGRVLNDFRSSLTPKMADMSICTPDWMKGT 356
>TC11222
Length = 557
Score = 76.6 bits (187), Expect = 1e-14
Identities = 41/67 (61%), Positives = 51/67 (75%), Gaps = 2/67 (2%)
Frame = +2
Query: 634 MVRDVLATPVSTVASESAFSTGGRVLDTYRSSLNPQMAEALICAQNWLK--PTLNQFKDL 691
+ +DVLA PVSTVASESAFST GRVL+ YRSSL+P+ EAL+CAQNW + P + ++L
Sbjct: 5 IAKDVLAMPVSTVASESAFSTRGRVLNNYRSSLSPKTVEALVCAQNWFRSGPLSSDIEEL 184
Query: 692 NINEEFE 698
EEFE
Sbjct: 185 --LEEFE 199
>BP038206
Length = 563
Score = 68.6 bits (166), Expect = 3e-12
Identities = 44/164 (26%), Positives = 80/164 (47%), Gaps = 5/164 (3%)
Frame = -3
Query: 86 KRYLCDPKTHGTSNLLAHSKVC----FKNPQNDPTQASLMFSNGEGGTLVAASQRFNPAA 141
K+ L +GT++L H C + +D QA LM +G + A ++
Sbjct: 561 KKKLSAISKNGTNHLRNHVAKCV*MKIQTRGHDKGQAFLMPKASQGKQELGAGA-YDADN 385
Query: 142 CRKAIALFVLLDEHAFRVVEGEGFKLLCRQLQPLLTIPSRRTVARDCFQLFLDENLRLKT 201
+ +A ++L ++ +V+ GF+ LQPL +P+R T+ ++ +++ + +
Sbjct: 384 SKSQLACAIILHDYPLSIVDHIGFQRYSNSLQPLFQVPTRNTIKKEVIKIYEFQKTCVMK 205
Query: 202 YFKSDCVRVALTTDCWTS-GQNFSYMTLTAHFINNDWKYEKRIL 244
S RVA+T+D WTS Q Y T+T H I++ W + R+L
Sbjct: 204 MLDSHEGRVAITSDMWTSNNQKRGYTTVTTHCIDSTWTLQSRVL 73
>BP078300
Length = 401
Score = 63.5 bits (153), Expect = 1e-10
Identities = 30/59 (50%), Positives = 40/59 (66%)
Frame = -2
Query: 637 DVLATPVSTVASESAFSTGGRVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNINE 695
D+LA P+STVASES FS GRV++ YRS LN + EALIC +WL+ + K ++E
Sbjct: 394 DILAIPISTVASESTFSA*GRVINEYRSKLNDESIEALICGGDWLRHKYHLMKKAKVDE 218
>AW428655
Length = 403
Score = 57.8 bits (138), Expect = 6e-09
Identities = 26/95 (27%), Positives = 52/95 (54%)
Frame = +2
Query: 426 FLKIFYDATKEFSSSQGVSLHKAFHQLASVHCELKRSAMNLNTVLASMGSDMKQKYNKYW 485
+LK YDA + + + FH++ + ++ R+ MN + + ++ M++K +KYW
Sbjct: 23 YLKPLYDAANILTPTTHPTAITFFHEVWKLQLDMSRAVMNEDPFIGNLTKPMQEKIDKYW 202
Query: 486 GKIENINKLIYFGVILDPRYKFSYVEWCFNDMYGD 520
+ N ++ V++DPR+K VE+ F +YG+
Sbjct: 203 ---RDCNLILALAVVMDPRFKMKLVEFSFTKIYGE 298
>AV777955
Length = 429
Score = 54.7 bits (130), Expect = 5e-08
Identities = 43/111 (38%), Positives = 55/111 (48%), Gaps = 12/111 (10%)
Frame = +1
Query: 50 RRKPNAGGPRRTSPAWDHFIKL--PDEPEPTAACIHCHKRYLCDPKTHGTSNLLAH-SKV 106
+RKP+ PR S WDHF K+ P A C C Y CD +GTSNL H
Sbjct: 100 KRKPSK--PR--SWTWDHFTKVIGSKSKTPRAQCN*CVATYACDSHKNGTSNLSNHLLNQ 267
Query: 107 CFKNPQ--NDPTQASLMF-------SNGEGGTLVAASQRFNPAACRKAIAL 148
C K P+ NDP+Q +L F G G TL A + F+ ACR+A+ +
Sbjct: 268 CKKVPREINDPSQKTLSFQQLKKEDGKGVGNTLSAVA--FDVEACREALVM 414
>BP078466
Length = 530
Score = 36.6 bits (83), Expect(2) = 3e-07
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -3
Query: 76 EPTAACIHCHKRYLCDP 92
+PTAAC HC K+YLCDP
Sbjct: 528 DPTAACKHCGKKYLCDP 478
Score = 35.0 bits (79), Expect(2) = 3e-07
Identities = 29/97 (29%), Positives = 39/97 (39%), Gaps = 24/97 (24%)
Frame = -1
Query: 93 KTHGTSNLLAHSKVCFKNPQN------------------------DPTQASLMFSNGEGG 128
KTHGTSNL A KVC N Q + F++ G
Sbjct: 473 KTHGTSNLNADIKVCPSISSNC*I*SKPNCSHFWA*W**RRRS*FSCNQPEI*FASL*KG 294
Query: 129 TLVAASQRFNPAACRKAIALFVLLDEHAFRVVEGEGF 165
+ A+++F++LDE FRVVEG+GF
Sbjct: 293 VV--------------ALSIFIILDEQPFRVVEGQGF 225
>BP057617
Length = 500
Score = 43.1 bits (100), Expect = 2e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -2
Query: 654 TGGRVLDTYRSSLNPQMAEALICAQNWLKPT 684
TGGRVL+ +RSSL P+MA+ IC +W+K T
Sbjct: 499 TGGRVLNDFRSSLTPKMADMSICTPDWMKGT 407
>BP041056
Length = 298
Score = 35.4 bits (80), Expect = 0.031
Identities = 19/48 (39%), Positives = 28/48 (57%)
Frame = -2
Query: 652 FSTGGRVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNINEEFEL 699
F T R +D+YRSSL+ EALIC ++W + ++ L IN +L
Sbjct: 294 FDTEIRKMDSYRSSLDSPTLEALICTKDWFR-----YESLPINVSNDL 166
>AV776899
Length = 396
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/51 (39%), Positives = 23/51 (44%), Gaps = 2/51 (3%)
Frame = +2
Query: 61 TSPAWDHF--IKLPDEPEPTAACIHCHKRYLCDPKTHGTSNLLAHSKVCFK 109
TS W F I D+ A C C Y C +GTS L H+KVC K
Sbjct: 245 TSDVWQKFTIIGRGDDGIQRAKCNGCRSEYKCGGD-YGTSTLRRHAKVCTK 394
>TC9022 similar to PIR|T46225|T46225 alpha NAC-like protein - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (75%)
Length = 1083
Score = 32.0 bits (71), Expect = 0.35
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 562 ESSYVSENVIPAEVPSHLARAEAFKEHLKLKESIVKKNELERYLDEERAEDVNFD 616
+ S+VS+N+ P V + AEA ++ L +E+ +KK + D EDV D
Sbjct: 75 QPSHVSQNMAPGPVVDASSEAEALEQVLSAEETTLKKKPQPQEDDAPIVEDVKDD 239
>AW164143
Length = 412
Score = 30.8 bits (68), Expect = 0.77
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 43 PLPCLAKRRKPNAGGPRRTSPAWDHFIKLPDEPEPTAACIHC 84
PLP RR P+ GP + H LPD P P C+ C
Sbjct: 181 PLPPHPHRRSPDPPGPPLPGHPYHHL--LPDWPAPLPRCLTC 300
>BP035176
Length = 444
Score = 30.4 bits (67), Expect = 1.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 72 PDEPEPTAAC-IHCHKRYLCDPKTHGTSNLLAHSKVCFKNPQNDPTQAS 119
P +P P AC HC K +C P + NLL + QN P+ +S
Sbjct: 52 PQQPLPNLACRAHCGKT-ICSPSVPHSMNLLTEPEKEAATSQNSPSYSS 195
>BP061345
Length = 543
Score = 30.4 bits (67), Expect = 1.0
Identities = 13/30 (43%), Positives = 15/30 (49%)
Frame = +2
Query: 77 PTAACIHCHKRYLCDPKTHGTSNLLAHSKV 106
PT + H H R CD + H NL AH V
Sbjct: 350 PTHSVAHTHTRRFCDRQRHCAHNLCAHXTV 439
>TC11153 similar to UP|Q9FJJ6 (Q9FJJ6) Genomic DNA, chromosome 5, TAC
clone:K19B1 (AT5g62460/K19B1_7), partial (17%)
Length = 451
Score = 29.3 bits (64), Expect = 2.3
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = +1
Query: 26 PTEQVAVATQVPVVGLPPLPCLAKRRKPNAGGPRRTSPAWDHFIKLPDEPEPTAACIHC 84
P + VA Q+P P L A A GP T+P D ++ DE EP C
Sbjct: 148 PVDPVAQPAQLPSEPSPSLDAAAA-----AAGPSGTAPPADQDVEDADEDEPLIQMAEC 309
>TC11884
Length = 557
Score = 29.3 bits (64), Expect = 2.3
Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 3/84 (3%)
Frame = +1
Query: 181 RRTVARDCFQLFLDENLRLKTYFKSDCV---RVALTTDCWTSGQNFSYMTLTAHFINNDW 237
R V+ C QL E++R+K+Y + DC+ L C +G Y ++ I W
Sbjct: 208 RGFVSNKCLQLLDAEHIRMKSYGRCDCLLRETHELPCGCELAG----YERISYEAIYPFW 375
Query: 238 KYEKRILSFCTVPNHKGDTIGRKV 261
K LS+ VP DTI +
Sbjct: 376 KR----LSWEHVPEPVADTISNHI 435
>TC12608
Length = 735
Score = 28.1 bits (61), Expect = 5.0
Identities = 13/40 (32%), Positives = 20/40 (49%)
Frame = -2
Query: 546 AYDQQHNSGHPSASPSESSYVSENVIPAEVPSHLARAEAF 585
+Y + S H SASP++ Y + P + PSH + F
Sbjct: 242 SYPESILSSHYSASPTQGHYPNPTSQPGQNPSHSPQTHPF 123
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,962,735
Number of Sequences: 28460
Number of extensions: 189254
Number of successful extensions: 1006
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of query: 707
length of database: 4,897,600
effective HSP length: 97
effective length of query: 610
effective length of database: 2,136,980
effective search space: 1303557800
effective search space used: 1303557800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC147434.12