TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147430.8 + phase: 1 /pseudo
         (437 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP035867                                                              116  8e-27
BP083809                                                               66  1e-11
BE122609                                                               41  4e-04
TC14379 homologue to UP|O23254 (O23254) Serine hydroxymethyltran...    32  0.27
NP459573 NADH dehydrogenase ND4L [Lotus japonicus]                     29  1.7
CN825308                                                               28  3.0
TC18435                                                                28  3.9
TC15776 homologue to UP|PSD6_ORYSA (Q8W425) 26S proteasome non-A...    27  8.7

>BP035867 
          Length = 482

 Score =  116 bits (290), Expect = 8e-27
 Identities = 63/136 (46%), Positives = 84/136 (61%)
 Frame = -2

Query: 194 KKITTFIYARTSLISILHSHTKNRDLVRPGATRFATSYLTLGCLYENKEALIRMFTSKEW 253
           +KIT +I +RT+LI++L  HT  RDL+RPG TRFATSYL LG  ++N  A  RMF S+E 
Sbjct: 481 RKITPYICSRTTLITLLQFHTHGRDLIRPGLTRFATSYLNLG*FHDNWGAFERMFASEE* 302

Query: 254 KSGKCAKLRDGKALEDIILDKKFWKDIVICLKGATPLMKVLRLADLDKKTSHGIHL*SNG 313
           +    AK RDGK + D+I+DK FWKDI  C+KG T   +           SH + L* N 
Sbjct: 301 QKRTYAKTRDGKKICDMIMDKLFWKDITTCVKGCTSFYESASCG*F-*YASHEVDL*GNR 125

Query: 314 SSKGANSKEF*WCQKE 329
              G ++K F WC ++
Sbjct: 124 QV*GDDTKSFSWCHEK 77


>BP083809 
          Length = 369

 Score = 66.2 bits (160), Expect = 1e-11
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
 Frame = +2

Query: 284 LKGATPLMKVLRLADLDKKTSHGIHL*SNGSSKGA--NSKEF*WCQKEPVWNIIDDRWDR 341
           LK   PL+ VLRLAD +KK + G    +   +K A   S      + + +W+IID+RW+ 
Sbjct: 83  LKVMGPLVCVLRLADSEKKPAMGYIYEAMDKAKEAIRASLHDDKSKYQKIWDIIDNRWNS 262

Query: 342 MLHRPLHAAAYYLNPQLHYRPG-FKADIEVRKGL 374
            LHRPLHAA ++LNP+ +Y       D EV+KG+
Sbjct: 263 QLHRPLHAAGHFLNPEYYYNDSELDYDFEVQKGV 364


>BE122609 
          Length = 356

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 26/87 (29%), Positives = 41/87 (46%), Gaps = 1/87 (1%)
 Frame = +1

Query: 352 YYLNPQLHY-RPGFKADIEVRKGLMDCITRMVEDPEEQAKIEVQMHDFKKQIGYFGTKIA 410
           ++LNP+  Y  P    D E+ +GL +    ++E  E   KI  ++  +    G+FG K +
Sbjct: 19  HFLNPEFFYANPTMDLDAEIMRGLYE----IIESDENTDKIPNELLVY*MVGGFFGMKAS 186

Query: 411 KLTLDKSTPADWWESVVFEYLELQRFA 437
                  +PA+WW S       LQ FA
Sbjct: 187 IKRRTTISPAEWWRSF*QHTPNLQSFA 267


>TC14379 homologue to UP|O23254 (O23254) Serine hydroxymethyltransferase
           (Serine methylase) (Glycine hydroxymethyltransferase)
           (SHMT) , partial (37%)
          Length = 605

 Score = 31.6 bits (70), Expect = 0.27
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 88  RRRTILNFLVNSPRGTVFLKSVDASNICKTSEKIFEMIDAVVEEVG 133
           RRRT +   VN+PRG V ++ ++++   +  + + E+I AVV   G
Sbjct: 405 RRRTGIRLDVNTPRGGVEVEGLESARAAEILDLVDELIAAVVAVTG 268


>NP459573 NADH dehydrogenase ND4L [Lotus japonicus]
          Length = 306

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = -2

Query: 153 EMLMRKRKKLYWTPCAAHCLDLMLEDLEKKIPIHGETIPKGKKITTFIYARTSLISILHS 212
           + L+R+ ++    P AA    + +  +EK  P +     K +K+T FI+   +  +I   
Sbjct: 269 DFLLREIEETIAGPIAASAAAIAITKIEKIFPFNWRLSKKSEKVTRFIF---TAFNISSR 99

Query: 213 HTKNRDLVR 221
           H + R + R
Sbjct: 98  HIRARTIFR 72


>CN825308 
          Length = 600

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = +2

Query: 11 CKVLLQQCHIIQRSKEFNIMCDMISRHGNGFKPPSYYDIRVKLLNQEVKSTNDALEEHKR 70
          C V    C +         +  M S  G+   PP Y+D + KL  +E  ST         
Sbjct: 26 CSVFPCFCSVFTPKSLAISLDSMASTEGSAAPPPLYFDEKWKLSKKEGSSTRSRSSSSTN 205

Query: 71 EWKKTS 76
            KK+S
Sbjct: 206FMKKSS 223


>TC18435 
          Length = 505

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = -2

Query: 161 KLYWTPCAAHCLDLMLEDLEKKIPI------HGETIPKGKKITTFIYART 204
           K YW P  A      LE+++KKI I       G+    G K+ T IY+ T
Sbjct: 432 KDYWAPTLALRWPTSLENIKKKIHIVSIIGGQGKVHILGNKLITSIYSHT 283


>TC15776 homologue to UP|PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase
           regulatory subunit 6 (26S proteasome regulatory particle
           non-ATPase subunit 7) (OsRPN7), partial (35%)
          Length = 686

 Score = 26.6 bits (57), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 154 MLMRKRKKLYWTPCAAHCLDLMLED 178
           ML R   K++WT C  +C  L L D
Sbjct: 525 MLARPTSKMHWTKCP*NCQYLCLSD 451


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,675,180
Number of Sequences: 28460
Number of extensions: 100044
Number of successful extensions: 633
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of query: 437
length of database: 4,897,600
effective HSP length: 93
effective length of query: 344
effective length of database: 2,250,820
effective search space: 774282080
effective search space used: 774282080
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)