TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147406.5 - phase: 0 /pseudo
         (99 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9608 similar to UP|Q94AZ4 (Q94AZ4) At1g12310/F5O11_2, partial ...    33  0.006
AV768096                                                               31  0.039
BP046949                                                               26  0.97
TC14273 similar to UP|DCE1_ARATH (Q42521) Glutamate decarboxylas...    26  0.97
AV415693                                                               26  1.3
BP034318                                                               25  2.2
TC20066 similar to GB|AAM91455.1|22137220|AY133625 AT3g11400/F24...    23  6.3
TC15648                                                                23  6.3
TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor S...    23  6.3
TC8539 similar to UP|Q94KE3 (Q94KE3) AT3g52990/F8J2_160 (Pyruvat...    23  8.2
TC18558 similar to UP|Q7XAE5 (Q7XAE5) S1 self-incompatibility lo...    23  8.2

>TC9608 similar to UP|Q94AZ4 (Q94AZ4) At1g12310/F5O11_2, partial (97%)
          Length = 817

 Score = 33.5 bits (75), Expect = 0.006
 Identities = 15/40 (37%), Positives = 24/40 (59%)
 Frame = -3

Query: 27  MQFVVKLLGKNLGYHAMRERLQKTWRTQGGFEIMDNDNGF 66
           ++ V KL  + LG+H     +QK+   +GG EI+  D+GF
Sbjct: 371 LEGVTKLAIEGLGFHVFGHEIQKSREIEGGGEILLGDDGF 252


>AV768096 
          Length = 358

 Score = 30.8 bits (68), Expect = 0.039
 Identities = 15/70 (21%), Positives = 33/70 (46%)
 Frame = +3

Query: 29 FVVKLLGKNLGYHAMRERLQKTWRTQGGFEIMDNDNGFYMVKFDEAADKEKVITGGPWLI 88
          F  K+L K     A+++ + + W      ++ D +   ++  F +A    +++  GPW I
Sbjct: 3  FTYKVLNKL----AVKQTIVRAWGNLQDLQVGDLNLNTFLFTFSDANLATRILAEGPWNI 170

Query: 89 FDHCLAVTHW 98
            + L++  W
Sbjct: 171MGNLLSLQFW 200


>BP046949 
          Length = 408

 Score = 26.2 bits (56), Expect = 0.97
 Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 5/44 (11%)
 Frame = +1

Query: 48 QKTWRTQG----GFEIMDNDNGFYMVKFDEAADKEKVIT-GGPW 86
          +K  ++QG    G+EIMD D    +V F     K+ V+  GG W
Sbjct: 40 KKIHKSQGPLKNGYEIMDGDTEIQLVLFR*KGGKQYVLKFGGAW 171


>TC14273 similar to UP|DCE1_ARATH (Q42521) Glutamate decarboxylase 1  (GAD 1)
            , partial (89%)
          Length = 1826

 Score = 26.2 bits (56), Expect = 0.97
 Identities = 14/29 (48%), Positives = 18/29 (61%)
 Frame = +3

Query: 43   MRERLQKTWRTQGGFEIMDNDNGFYMVKF 71
            ++E LQKT    G FEI+  DNG  +V F
Sbjct: 1125 LKEGLQKT----GRFEIVSKDNGVPLVAF 1199


>AV415693 
          Length = 394

 Score = 25.8 bits (55), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (56%)
 Frame = -3

Query: 15  NQSFNNYVRHGRMQFVVKLLGKNLGYHAMRERLQKTWRTQGG 56
           NQ F N+     + +  KL  ++L  HA+R + ++ W+ +GG
Sbjct: 212 NQPFCNWKPEEALYW*TKLQKQHLP-HALRRKNERRWKKRGG 90


>BP034318 
          Length = 559

 Score = 25.0 bits (53), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 12  ISNNQSFNNYVRHGRMQFVVKLLGKNLGYHAMRERLQK 49
           I  N SFN     GR QF+++ + K+     +R RL++
Sbjct: 195 IGGNVSFNYTSSGGRKQFIIRSIRKDSIDGLVRSRLKE 82


>TC20066 similar to GB|AAM91455.1|22137220|AY133625 AT3g11400/F24K9_7
          {Arabidopsis thaliana;}, partial (45%)
          Length = 557

 Score = 23.5 bits (49), Expect = 6.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 83 GGPWLIFDHCL 93
          G PWL  +HCL
Sbjct: 80 GAPWLSIEHCL 48


>TC15648 
          Length = 536

 Score = 23.5 bits (49), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -2

Query: 82  TGGPWLIFD-HCLAVTHW 98
           T GP+ ++  HCL + HW
Sbjct: 202 THGPFTVYPWHCLQLVHW 149


>TC10777 similar to UP|Q9SCL3 (Q9SCL3) Pre-mRNA splicing factor SF2-like
           protein, partial (46%)
          Length = 597

 Score = 23.5 bits (49), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (47%)
 Frame = +1

Query: 66  FYMVKFDEAADKEKVITGGPWLIFDHC 92
           +  V+FD A D E  I G     FD C
Sbjct: 376 YCFVEFDNARDAEDAIRGRDGYNFDGC 456


>TC8539 similar to UP|Q94KE3 (Q94KE3) AT3g52990/F8J2_160 (Pyruvate
           kinase-like protein), partial (81%)
          Length = 1430

 Score = 23.1 bits (48), Expect = 8.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 45  ERLQKTWRTQGGFEIMDND 63
           ER  + WRT     + DND
Sbjct: 870 ERNSRAWRTSSACRVYDND 814


>TC18558 similar to UP|Q7XAE5 (Q7XAE5) S1 self-incompatibility locus-linked
           pollen 3.15 protein (Fragment), partial (18%)
          Length = 639

 Score = 23.1 bits (48), Expect = 8.2
 Identities = 10/24 (41%), Positives = 15/24 (61%), Gaps = 2/24 (8%)
 Frame = +2

Query: 77  KEKVITGG--PWLIFDHCLAVTHW 98
           K  V T G   +LI+D C+ +TH+
Sbjct: 77  KSAVTTSGLSHYLIYDSCINITHY 148


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,734,878
Number of Sequences: 28460
Number of extensions: 17391
Number of successful extensions: 127
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of query: 99
length of database: 4,897,600
effective HSP length: 75
effective length of query: 24
effective length of database: 2,763,100
effective search space: 66314400
effective search space used: 66314400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)